Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20748
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 43 2e-04
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 35 0.073
U39742-8|AAP68951.1| 392|Caenorhabditis elegans Drosophila disc... 30 1.6
U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila disc... 30 1.6
AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein... 30 1.6
AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like pr... 30 1.6
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 8.4
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 8.4
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/130 (25%), Positives = 61/130 (46%)
Frame = +1
Query: 298 PRLRELFFDAATEEREHAIQAH*LPAHEGQADRLRNRPHHVQGPRQHVVGERRISPRARP 477
P + + F + + EEREHA + + G L++ +Q P G + A
Sbjct: 45 PNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD----IQKPENDEWGTALKAFEAAL 100
Query: 478 QAGE*RHQQHREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHA 657
+ ++ ++ T + ND HL D++ ++LDEQ K + A + LK++
Sbjct: 101 ALEKFNNESLLKLHSTA-GNHNDAHLTDFIEEKYLDEQVKSINEFARMVANLKRV---GP 156
Query: 658 ALGEFIFDKK 687
+GE++FDK+
Sbjct: 157 GVGEYVFDKE 166
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 541 NDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKK 687
ND HL +Y+ ++L+EQ + A + +K+ LGE++FDK+
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR---AGPGLGEYLFDKE 166
>U39742-8|AAP68951.1| 392|Caenorhabditis elegans Drosophila discs
large homologprotein 1, isoform b protein.
Length = 392
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 511 PDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNELGSRARVLQ 332
P GD ++ + ++EG A R+ + V C+ HE VN L S V+
Sbjct: 177 PTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNALKSSGNVVS 236
Query: 331 SQHRRIVREA 302
+R EA
Sbjct: 237 LSLKRRKDEA 246
>U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila discs
large homologprotein 1, isoform a protein.
Length = 967
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 511 PDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNELGSRARVLQ 332
P GD ++ + ++EG A R+ + V C+ HE VN L S V+
Sbjct: 223 PTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNALKSSGNVVS 282
Query: 331 SQHRRIVREA 302
+R EA
Sbjct: 283 LSLKRRKDEA 292
>AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein
DLG-1 protein.
Length = 967
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 511 PDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNELGSRARVLQ 332
P GD ++ + ++EG A R+ + V C+ HE VN L S V+
Sbjct: 223 PTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNALKSSGNVVS 282
Query: 331 SQHRRIVREA 302
+R EA
Sbjct: 283 LSLKRRKDEA 292
>AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like
protein DLG-1 protein.
Length = 967
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 511 PDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNELGSRARVLQ 332
P GD ++ + ++EG A R+ + V C+ HE VN L S V+
Sbjct: 223 PTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNALKSSGNVVS 282
Query: 331 SQHRRIVREA 302
+R EA
Sbjct: 283 LSLKRRKDEA 292
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 1974 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 2033
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 2034 SVQHMQQQQLARP 2046
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 1996 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 2055
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 2056 SVQHMQQQQLARP 2068
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 817 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 876
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 877 SVQHMQQQQLARP 889
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 795 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 854
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 855 SVQHMQQQQLARP 867
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 1974 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 2033
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 2034 SVQHMQQQQLARP 2046
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 531 EQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHI- 707
E L R+ P V +P ++ P+RP + LD R P L Q ++ +
Sbjct: 1996 ETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRVIAPSLRREPTTTPLIQPVHPVQSVQ 2055
Query: 708 NILHVTPPLRSNP 746
++ H+ + P
Sbjct: 2056 SVQHMQQQQLARP 2068
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,224
Number of Sequences: 27780
Number of extensions: 302442
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -