Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20748
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    33   0.28 
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    31   0.64 
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    31   0.84 
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    30   1.5  
At1g13050.1 68414.m01513 expressed protein                             30   1.5  
At1g23600.1 68414.m02972 expressed protein contains Pfam profile...    29   2.6  
At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PP...    29   3.4  
At1g79060.1 68414.m09218 expressed protein                             29   4.5  
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    28   5.9  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    28   7.8  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    28   7.8  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    28   7.8  

>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
            similar to nuclear matrix constituent protein 1 (NMCP1)
            [Daucus carota] GI:2190187
          Length = 1128

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +3

Query: 495  SPTASGGHQDLREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVH 674
            +PT+S  H  L E  +    G + V    ++T  G  R +RQ +D     G+ RR + V 
Sbjct: 931  NPTSSVKHASLEESSKDELSGHVSVTS--KKTTGGGGR-KRQHIDDTATGGKRRRQQTVA 987

Query: 675  LRQETPRIEHINI 713
            +  +TP   H N+
Sbjct: 988  VLPQTPGQRHYNL 1000


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 541 NDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLL 693
           ND  LVD++  EFL EQ +  + ++   + L+++   H   G + FD+ LL
Sbjct: 202 NDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGH---GVWHFDQMLL 249


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 532 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLL 693
           S  ND HL D++  EFL EQ +  + ++   + L+++   H   G + F++ LL
Sbjct: 207 SKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKGH---GTWHFNQMLL 257


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 576 IPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHINILHVTPPLRSNP 746
           +P R V  P  P+     PQ +D   + P +       P+  H +++H  PP  S P
Sbjct: 401 VPTRPVHKPQPPKES---PQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPP 454


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 334 EEREHAIQAH*LPAHEGQADRLRNRPHHVQGPRQHVVGERRISPRAR 474
           E   H +Q      H+G      N PHH Q P+ H V   R+  + R
Sbjct: 7   ETNPHFVQFSLQDQHQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTR 53


>At1g23600.1 68414.m02972 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 270

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 230 GGSGRVNPDLAMGAYFS-IDTVNRPGFANYSSMLRLKNASTRSKLI 364
           GG G++ P + M  YF     +N P F+ Y   + +K   T  K++
Sbjct: 212 GGQGKIAPKVTMDQYFQPYPLLNLPPFSWYIRNITIKTTKTLLKML 257


>At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PPA)
           / pyrophosphate phospho-hydrolase / PPase nearly
           identical to SP|P21216 Soluble inorganic pyrophosphatase
           (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase)
           {Arabidopsis thaliana}
          Length = 218

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 182 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 33
           P+I  G+  D  +  C          D KE  PH   +   RFF+D +KN
Sbjct: 133 PMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPH-RLAEIRRFFEDYKKN 181


>At1g79060.1 68414.m09218 expressed protein
          Length = 396

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 203 ASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLN 75
           ASLL   PL+ D D   V++ S   S  S+ S    E+ P L+
Sbjct: 175 ASLLMSLPLLKDSDSESVSISSSRMSLSSSSSGHDHEDLPRLS 217


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 296  RPGFANYSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLITY 421
            +PG  +Y+ M+++   S     +D LL   +  G  TDL TY
Sbjct: 876  KPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTY 917


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 YSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLIT 418
           +S  +   N S+ SKL + +L R KL GS+ + I+
Sbjct: 281 FSGPIEFANISSSSKLQNLILTRNKLDGSIPESIS 315


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = +3

Query: 456 HQPSSTPSSWR----VTSPTASGGHQDLREQLQRLPPGRL-LVRG----IPRRTVQGP 602
           HQP STPSS       T+P A  G  D    + + P G +  V G    IP+RT  GP
Sbjct: 717 HQPGSTPSSSSQTPYPTTPNAPSGQFDGGNFMTQQPYGVIPQVHGVPSHIPQRTQSGP 774


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 543 RLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETP 692
           R PP R  +R   R  ++ P R R   + P++  G A R  R      +P
Sbjct: 315 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSP 364


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 543 RLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETP 692
           R PP R  +R   R  ++ P R R   + P++  G A R  R      +P
Sbjct: 322 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSP 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,472
Number of Sequences: 28952
Number of extensions: 282384
Number of successful extensions: 855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)