Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20747
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 0.57
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.76
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 28 1.7
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 2.3
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 3.0
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 4.0
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.3
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 5.3
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 7.0
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 26 7.0
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 7.0
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 7.0
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.3
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 536 AMPMDTAFVVTKPALNTLSSQRKNVRRRRCGKMNATRVGALRMVNP 673
A P DT + TKP NTL S K+ +N T +R + P
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIKP 667
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 134 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 42
AR F +F V+ N DCN TPH +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 484 QRMRSGIVGSNQCNSCRCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECNTC 648
+ +S + GSN NSC C D + S+ I+ + C+ M K TC
Sbjct: 105 ENRKSSLYGSNGINSCGC-VDISNVGSESGTKHQIVVGESNCSAYGM-KENIYTC 157
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 416 LGLCSLDACRRSSTPKKFELIQGRECAPGSSGRTSVTV 529
L L +L CR S K E+ G +CA G + T +V
Sbjct: 89 LALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASV 126
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/42 (28%), Positives = 15/42 (35%)
Frame = +2
Query: 200 RVCRPRNAVGSGMPGGNRGESNCHFCRCSDSGVAECLRQDSC 325
R CR G GG+R NC+ C +C C
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 252
+V+P NA+ HV K + NR Q++ SKKC +W + EP
Sbjct: 19 EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/39 (23%), Positives = 17/39 (43%)
Frame = -1
Query: 716 FSGVLLVMHSILVHMGLPSEVHQHVLHSFFHIVFGAHSF 600
F +L + + + LP ++ H LH F H + +
Sbjct: 35 FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHY 73
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 586 CVQCRLRHYKCRIHRHCTYNCY 521
C+ CR R KC +R C +NC+
Sbjct: 26 CLYCRRRKIKCDKNRPC-HNCF 46
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 54 EMRCLIAICFIVLARHCESGALKCSP 131
+M +A+ I++ RH S AL+CSP
Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 7.0
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +2
Query: 362 PGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSGRTSVTVVGAM 541
PGT F C+T CL+ + C D ++S++ + + E G SG + VG +
Sbjct: 718 PGTEFSLGCDT--CLNAVMEYC--DTIKQSASASRRRVFV-CEVQGGRSG--YIATVGGL 770
Query: 542 PMDTAFVVTKPALNTLSSQRKNVRRRRCG---KMNATRVGALRMVNPCA 679
+ + T +L RK++ + + R G L + N CA
Sbjct: 771 ITGASAIYTPEDGISLDMLRKDIDHLKATFALEAGRNRAGQLILRNECA 819
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 608 VRRRRCGKMNATRVGALRMVNPCALGWNASL 700
VR +RC + ++RV V +GWN++L
Sbjct: 286 VRLQRCAILKSSRVRDHAWVKSSIVGWNSTL 316
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 586 CVQCRLRHYKCRIHRHCTYNC 524
C+ CR R KC + YNC
Sbjct: 46 CLTCRKRRIKCDERKPICYNC 66
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 362 PGTSFQRDCNTCVCLDNGL 418
P TSF D N CV D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 77 LFYRFGATLRKWS 115
+FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 321 LSCLKHSATPESEHLQKWQLLSPRFP 244
LS L+ A+ + H+ WQLLSP +P
Sbjct: 679 LSALQQIAS--TRHISVWQLLSPYWP 702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,450
Number of Sequences: 5004
Number of extensions: 79253
Number of successful extensions: 274
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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