Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20746
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...   140   3e-34
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...   140   3e-34
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    62   7e-11
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    57   2e-09
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.74 
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    28   1.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    27   2.3  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    27   4.0  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   5.2  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   6.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   6.9  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   9.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.2  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score =  140 bits (338), Expect = 3e-34
 Identities = 61/87 (70%), Positives = 72/87 (82%)
 Frame = +2

Query: 254 VIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 433
           +I +HLPSP  AQ+YR E LYEGP DDE A+GI++CD  APLM+YVSKMVPTSD+GRFYA
Sbjct: 337 MIVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYA 396

Query: 434 FGRVFSGKVVTGQKARIMGPNFTPGRK 514
           FGRVFSG V +G K RI GPN+ PG+K
Sbjct: 397 FGRVFSGTVRSGLKVRIQGPNYVPGKK 423



 Score =  137 bits (332), Expect = 1e-33
 Identities = 68/90 (75%), Positives = 77/90 (85%)
 Frame = +1

Query: 508 KKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVM 687
           KK+DL+ K IQRT+LMMG  +E IED P+GNI GLVGVDQFLVK+GT+TT + AHNMKVM
Sbjct: 422 KKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTTSEVAHNMKVM 481

Query: 688 KFSVSPVVRVAVEPKNPADLPKLVEVLKRL 777
           KFSVSPVV+VAVE KN  DLPKLVE LKRL
Sbjct: 482 KFSVSPVVQVAVEVKNGNDLPKLVEGLKRL 511



 Score =  105 bits (251), Expect = 9e-24
 Identities = 47/88 (53%), Positives = 68/88 (77%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3   FFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK 170
           +FNP+TKKWSK   D     N+R+F M++LDPIY++FDA+M  +K+E+  LL K+ VTIK
Sbjct: 249 YFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFTLLSKLEVTIK 308

Query: 171 HEDSDKDGKALLKVVMRSWLPAGEALLQ 254
            ++ + +GKALLKVVMR +LPA +AL++
Sbjct: 309 PDEKELEGKALLKVVMRKFLPAADALME 336


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score =  140 bits (338), Expect = 3e-34
 Identities = 61/87 (70%), Positives = 72/87 (82%)
 Frame = +2

Query: 254 VIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 433
           +I +HLPSP  AQ+YR E LYEGP DDE A+GI++CD  APLM+YVSKMVPTSD+GRFYA
Sbjct: 337 MIVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYA 396

Query: 434 FGRVFSGKVVTGQKARIMGPNFTPGRK 514
           FGRVFSG V +G K RI GPN+ PG+K
Sbjct: 397 FGRVFSGTVRSGLKVRIQGPNYVPGKK 423



 Score =  137 bits (332), Expect = 1e-33
 Identities = 68/90 (75%), Positives = 77/90 (85%)
 Frame = +1

Query: 508 KKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVM 687
           KK+DL+ K IQRT+LMMG  +E IED P+GNI GLVGVDQFLVK+GT+TT + AHNMKVM
Sbjct: 422 KKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTTSEVAHNMKVM 481

Query: 688 KFSVSPVVRVAVEPKNPADLPKLVEVLKRL 777
           KFSVSPVV+VAVE KN  DLPKLVE LKRL
Sbjct: 482 KFSVSPVVQVAVEVKNGNDLPKLVEGLKRL 511



 Score =  105 bits (251), Expect = 9e-24
 Identities = 47/88 (53%), Positives = 68/88 (77%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3   FFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK 170
           +FNP+TKKWSK   D     N+R+F M++LDPIY++FDA+M  +K+E+  LL K+ VTIK
Sbjct: 249 YFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFTLLSKLEVTIK 308

Query: 171 HEDSDKDGKALLKVVMRSWLPAGEALLQ 254
            ++ + +GKALLKVVMR +LPA +AL++
Sbjct: 309 PDEKELEGKALLKVVMRKFLPAADALME 336


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = +2

Query: 251 SVIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGI--KSCDPEAPLMMYVSKMVPTSDKGR 424
           + +  H+PSP      +    Y GP +      I   S +  APL+M+V+K+  T D   
Sbjct: 443 NAVTRHIPSPRENAARKASQSYIGPINSSIGKAILEMSREESAPLVMHVTKLYNTVDANN 502

Query: 425 FYAFGRVFSGKVVTGQKARIMGPNFT 502
           FYAF RV+SG+V  GQK +++G N++
Sbjct: 503 FYAFARVYSGQVKKGQKVKVLGENYS 528



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   FFNPQTKKWSKQK-DDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIKHED 179
           +F+ +T+K++KQ  D    RSF  ++L+P+YK+    +  + E++   L    + +K +D
Sbjct: 359 YFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAEKLKKHLSSFQIYLKPKD 418

Query: 180 SDKDGKALLKVVMRSW 227
              D K LL+++  S+
Sbjct: 419 YLLDPKPLLQLICASF 434



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = +1

Query: 511 KEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFK---NAHNMK 681
           +ED+    I    +   RY   ++   +G +  L GVD  + KT TI +     + +  +
Sbjct: 532 EEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTATIVSDNLKDDPYIFR 591

Query: 682 VMKFSVSPVVRVAVEPKNPADLPKLVEVLKR 774
            +      V +VAVEP NP++LPKL++ L++
Sbjct: 592 PIAHMSESVFKVAVEPHNPSELPKLLDGLRK 622


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 28/82 (34%), Positives = 49/82 (59%)
 Frame = +1

Query: 532 TIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVV 711
           T++   LMMG+ +  +E VP+GN+  + G+   +++T T+ +  N  N+  +   + P+V
Sbjct: 505 TVESLYLMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCSSPNGPNLVGVTQQMEPIV 564

Query: 712 RVAVEPKNPADLPKLVEVLKRL 777
           RVA+EP  P ++ KLV  L  L
Sbjct: 565 RVALEPVRPFEMNKLVTGLDML 586



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
 Frame = +2

Query: 269 LPSPVVAQKYRM-EMLYEGPH----DDEAAIGIKSCDP--EAPLMMYVSKMVPTSDK 418
           +PSP+ AQ  R  ++L   PH    D +  + ++SCD   E P+++Y+SKMV  S++
Sbjct: 351 IPSPINAQANRARKVLSSTPHYEMIDPDITLAMESCDASKEQPVLVYISKMVAFSER 407



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 413 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 505
           DK     F R++SG +  GQ+  + GP + P
Sbjct: 464 DKDILIGFARIYSGTISVGQEVYVYGPKYDP 494


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582 LNSFNITSHHKDCTLD-SLLIQVLFLPGVKFGPMM 481
           +N F+I   +  C++  S L+Q LF+ G  FGPM+
Sbjct: 110 INFFDIYQTNWHCSIQVSYLVQSLFIVGNAFGPML 144


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 613 VGVDQFLVKTGTITTFKNAHNMKV--MKFSVSP 705
           +GVD F  K G +  +K+  N+K+  +K+ V+P
Sbjct: 404 MGVDDFEEKPGVLANWKSVKNLKLLSLKYDVTP 436


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 161 DSNLLKEIINLLFLKFH-DGIEHLVDRIQNV 72
           D N+L+  +NL  LKFH   IE ++D   +V
Sbjct: 3   DENILRNAVNLQVLKFHYPEIESIIDIASHV 33


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 622 DQFLVKTGTITTFKNAHNMKVMKFSVSPVV 711
           D FLVK G +   ++ +N+    FSVS +V
Sbjct: 82  DTFLVKYGDLINIQDPYNLNKTLFSVSDLV 111


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 317 EGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSD 415
           +G H  EA   +K CDPE  L +  SK   T++
Sbjct: 193 DGTHLAEA---LKKCDPETTLFLIASKTFTTAE 222


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 3   FFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK---- 170
           + +   K  +K+K   NK++    +LDPI       ++    EI  L K +G+  K    
Sbjct: 74  YLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDKSA 133

Query: 171 HEDSDKDGKALLK 209
           H   DK+   LL+
Sbjct: 134 HSKIDKEFGWLLE 146


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 90  YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 221
           Y+V +  + F+K+ +D ++K      + E   +S K G+ ++ VV R
Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 152 LLKEIINLLFLKFHDGIEHLVDRIQNVHAK 63
           LL+  I ++FL  H G+ H+   I+N   K
Sbjct: 133 LLEPNIGMIFLYTHSGMTHITPSIRNDSTK 162


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -1

Query: 193 PSLSESSCLIVTPIFLRRSSISSFLNFMMASNTL*IGSKTYMQNERLLSSSFCFDHFFV 17
           P +S S C+    +F+  S   S  +F+M S  L + S+ Y   + +   S+C  +  +
Sbjct: 417 PFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSNLSI 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,978
Number of Sequences: 5004
Number of extensions: 74713
Number of successful extensions: 248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)