Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20746
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 158 5e-39
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 4e-11
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 42 4e-04
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 31 0.79
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 31 1.0
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.2
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1) 29 4.2
SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3) 29 4.2
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 158 bits (383), Expect = 5e-39
Identities = 76/90 (84%), Positives = 82/90 (91%)
Frame = +1
Query: 508 KKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVM 687
KKEDLY KTIQRTILMMGRY+E I DVP GNI GLVGVDQFLVKTGTI+T+++ HNMK+M
Sbjct: 412 KKEDLYLKTIQRTILMMGRYIEPIVDVPCGNIVGLVGVDQFLVKTGTISTYEHCHNMKMM 471
Query: 688 KFSVSPVVRVAVEPKNPADLPKLVEVLKRL 777
KFSVSPVVRVAVEPKNPADLPKLVE L RL
Sbjct: 472 KFSVSPVVRVAVEPKNPADLPKLVEGLNRL 501
Score = 132 bits (320), Expect = 2e-31
Identities = 62/87 (71%), Positives = 71/87 (81%)
Frame = +2
Query: 254 VIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYA 433
+IAIHLPSPVV+QKYR E+LYEGP DD A+GIK+CDPE MVPTSDKGRFYA
Sbjct: 336 MIAIHLPSPVVSQKYRCELLYEGPQDDAVALGIKACDPE---------MVPTSDKGRFYA 386
Query: 434 FGRVFSGKVVTGQKARIMGPNFTPGRK 514
FGRVFSGKV +GQK RIMGP++ PG+K
Sbjct: 387 FGRVFSGKVASGQKVRIMGPHYVPGKK 413
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +3
Query: 3 FFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDS 182
F N + KKW K++ N R F +VLDPI+K+FDAIM FKKE +LL+K+ + + E+
Sbjct: 252 FINAEDKKWKKEQATGNVRGFNQFVLDPIFKMFDAIMNFKKEATANLLEKLKIKLTVEER 311
Query: 183 DKDGKALLKVVMRSWLPAGEALLQ 254
+ +GK L K VMR WLPAGEA+LQ
Sbjct: 312 ELEGKPLFKTVMRKWLPAGEAMLQ 335
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 65.7 bits (153), Expect = 4e-11
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +2
Query: 299 RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 478
++E Y GP D + + +CDP+ LM++ +K P+ D F+ FGRV SG + GQ+
Sbjct: 316 QVEHNYTGPLDSDIVDAMNNCDPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQV 375
Query: 479 RIMGPNFT 502
RI+G N+T
Sbjct: 376 RILGENYT 383
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = +1
Query: 499 YTWK-KEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKN--- 666
YT + +ED + R + RY + VP+GN + GVDQ +VKT TIT +
Sbjct: 382 YTMEDEEDSRVGIVGRLWIAEARYNIEVNRVPAGNWVLIEGVDQPIVKTATITEVQGSEE 441
Query: 667 AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEVLKRL 777
A+ + +KF+ +++AVEP NP++LPK+++ L+++
Sbjct: 442 AYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKV 478
Score = 31.9 bits (69), Expect = 0.60
Identities = 11/37 (29%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +3
Query: 3 FFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAI 110
+F+ +T+K++++ ++RSF ++L+P+YK+F +
Sbjct: 281 YFSSKTRKFTRKAPLSTSQRSFVEFILEPMYKIFGQV 317
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +3
Query: 3 FFNPQTKKWSKQKDDDNKRS-FCMYVLDPIYKVFDAIM----KFKKEEIDDLLK-KIGVT 164
+ + +TK+ K+ NK+ F ++LD I+ ++DA++ K K E+I + LK KI V
Sbjct: 262 YLDSKTKRIFKKAQLKNKKPLFVQFILDNIWALYDAVVIRRDKVKSEQISNSLKLKISV- 320
Query: 165 IKHEDSDKDGKALLKVVMRSWLPAGEALL 251
+ D + L + WLP ALL
Sbjct: 321 --RDSRSSDRRVYLHAICSQWLPLSSALL 347
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 413 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 505
+K F AF RV+SG + GQ+ I+GP P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 3 FFNPQTKKWSKQKDDDNKRSFCMYVLDPIYK 95
F N + KKW K++ N R F +VLDPI+K
Sbjct: 79 FINAEDKKWKKEQATGNVRGFNQFVLDPIFK 109
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 740 AGFLGSTATRTTGDTLNFITFMLWAFLKVVMVP-VLTKN*STPTRPQMLPE 591
AG+ S+A+ TT +N++TF K V VP L+ + S+P P +L E
Sbjct: 621 AGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPASPSILGE 671
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = -1
Query: 532 SSHTSPLSSRCKVWSHDASFLSGNNLARENASKGVETTLVGGRHHL----AHVHHQWGFR 365
SSHT L + WSH + ++ R N+S G G HH +H + W
Sbjct: 155 SSHTEQLIAHTNNWSHTR---NNSSHTRNNSSHGTTHRTHGTTHHTQNNSSHTRNNWSHT 211
Query: 364 ITALDTNGS 338
T T G+
Sbjct: 212 RTTHRTQGT 220
>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 290 QKYRMEMLYEGPHDDEAAI 346
+++++ YEGPHDDEA +
Sbjct: 548 ERHKINFKYEGPHDDEAIV 566
>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 431 RRNDPCRRSAPSCSRTSSVGLQDHSS*YQWQLHHHGVPRITSPYDISGPLQVMVNEW 261
+R P P C R S GL + +L HH + DI G L++M N+W
Sbjct: 187 QRIGPLTTGGPVCWRVSVWGLSPQTIRRSAELPHHVIQTCIILNDIDGLLEIM-NKW 242
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 776 RRFKTSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 654
RRFK T GR+ FLG+ + R T NF+ F+ F+++
Sbjct: 1694 RRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
Length = 311
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 699 YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITSHHKDCTLDSLLIQ 520
+ E HHLH S + + L+ N T + R H+ S T+ C L ++L
Sbjct: 93 FWESHHLHFTAPSNSSEDSYYHGNLMLRNHTNRILRDHVFTSAACTTKLVVCYLIAILAI 152
Query: 519 VLFLPG 502
+ + G
Sbjct: 153 LEIMAG 158
>SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)
Length = 210
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 708 DW*YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITS 559
DW T HH G ++ DG D E+ DSN+ VT L++ NI S
Sbjct: 152 DWALTNPHHDGPDG--KTSDGNKTDSEIQDSNKKESVTDKISLDACNIMS 199
>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +3
Query: 6 FNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTI 167
++P T KW +R C + I+ + K + ++D K +GVT+
Sbjct: 443 YDPHTNKWKMVSPMLKRRGECFAIRKGIFVEWTLCFKAMEMNLEDQNKGVGVTV 496
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 90 YKVFDAIMKFKKEEIDDLLKKIGVTI 167
Y+ I K K+EIDDL KK+G+ +
Sbjct: 482 YEEHPEITKQSKQEIDDLRKKMGIKV 507
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,201,682
Number of Sequences: 59808
Number of extensions: 581722
Number of successful extensions: 1655
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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