Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20745
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    36   4e-04
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.81 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 492 SHRRRFVLTERACTVFMRQICEGIEFVHRQNILHLDLKPENILCLTKTGNRIKIIDFGLA 671
           S    F++  +      RQ+  G+E + +  ++H DL   N+L      + +K+ DFGL+
Sbjct: 582 SFENDFIIQPKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVC--ENHTVKVSDFGLS 639

Query: 672 R 674
           R
Sbjct: 640 R 640


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 430 DWGKYMCVVLELITGGELFERVI 498
           D GKY+CVV   + GGE  E V+
Sbjct: 301 DSGKYLCVVNNSV-GGESVETVL 322


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 PFPCRDVTIKRNTDVNENYEMLSETDEAN 268
           PF C  V     T    N+ M+S  DE++
Sbjct: 201 PFACTHVIYAFATIDPHNFNMISNDDESD 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,239
Number of Sequences: 336
Number of extensions: 3406
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)