Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 351 SCKFHRPSGGNTSGACR 401
           SC+FH+ +  NT   CR
Sbjct: 84  SCRFHQGASYNTLNTCR 100


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 141 ASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRL 248
           A+RG     G  G   +HR  +A Q  ++A+   +L
Sbjct: 289 AARGAARADGAGGPLHDHRPALAQQRRVAAVQVPQL 324


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 595 ATVLYPPQSYHLHHHVTNI 539
           AT   P  + H+HHH T++
Sbjct: 123 ATSQPPTDNSHVHHHQTSL 141


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 619 IIGHRGNPATVLYPPQSYHLHHHVTNISKHP 527
           ++G  G+P        ++H+ HH+    +HP
Sbjct: 148 VLGPTGSPPLTTQSMNNHHMGHHMQ--EQHP 176


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 619 IIGHRGNPATVLYPPQSYHLHHHVTNISKHP 527
           ++G  G+P        ++H+ HH+    +HP
Sbjct: 150 VLGPTGSPPLTTQSMNNHHMGHHMQ--EQHP 178


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 622 YAFVLLASQVHFFQLYFSFNLLKAWRARGALRES 723
           Y  VLL    +FF + F   LL A +    + E+
Sbjct: 76  YCSVLLVFLTYFFNILFRKKLLNAVKILSKIDET 109


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 90  YNEIVFCCFVLIFSQKM 140
           Y  ++FCC  +IF+  +
Sbjct: 263 YMHLLFCCAFIIFTMHL 279


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 622 YAFVLLASQVHFFQLYFSFNLLKAWRARGALRES 723
           Y  VLL    +FF + F   LL A +    + E+
Sbjct: 72  YCSVLLVFLTYFFNILFRKKLLNAVKILSKIDET 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,381
Number of Sequences: 336
Number of extensions: 4102
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)