Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   2.1  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   6.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.4  

>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 637 IARRHTIIGHRGNPATVLYPPQSYHLHHHVTNISKHP 527
           I++R   +    N      PP++Y  +H V  +S+HP
Sbjct: 6   ISQRFIDMMRSKNSQNASQPPETYPFYHEVRQMSQHP 42


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 606 GVTLPQFYIHLRAIIFIIM*QISPN 532
           G+TLP+  IH+  +IF+     SPN
Sbjct: 21  GLTLPRLLIHIPILIFLQSRGTSPN 45


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 463 VCLWHSGTGILSVIVRVLYYCGDVWRYL 546
           +  W   T ++++ +  LY+ G VW +L
Sbjct: 381 IIAWIIETALVAIFISNLYHLGSVWPWL 408


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 605 PMAYYGMPSCY*HHKYIFSN 664
           PM   G PS Y  H+Y+ SN
Sbjct: 144 PMNLQGFPSAYQQHQYLQSN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,128
Number of Sequences: 5004
Number of extensions: 61346
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)