Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818     31   0.71 
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662...    31   1.2  
05_03_0019 - 7431578-7431583,7431650-7431868                           30   2.2  
10_08_1037 - 22477358-22478752                                         29   5.0  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    29   5.0  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    29   5.0  
04_01_0445 + 5812277-5813893                                           28   8.7  

>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
          Length = 530

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 637 IARRHTIIGHRGNPATVLYPPQSYHLHHH 551
           +     +  HR +PAT+ +P  S H HHH
Sbjct: 223 VVEEEDVTSHRFSPATMSHPRSSSHHHHH 251


>03_05_0705 -
           26965352-26965542,26965732-26965763,26966141-26966235,
           26966737-26966810,26966894-26967029,26967137-26967200,
           26967285-26967350,26967445-26967587,26969314-26969407,
           26969779-26969902,26970016-26970193,26970273-26970395,
           26970884-26970955,26971032-26971139,26972511-26972627,
           26972757-26972889,26973209-26973299,26974642-26974722,
           26975342-26975421,26975500-26975705,26977417-26977893
          Length = 894

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 289 HPEEQYVVEEHTYLRRDLLSALM*YCMATFSRCSKSAPFVP 167
           HP   YV+ +      D L  L  +   T++RC++S   VP
Sbjct: 793 HPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVP 833


>05_03_0019 - 7431578-7431583,7431650-7431868
          Length = 74

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 MASRGGVMVTGTNGADFEHREKVAIQYHISA 230
           M  R G  V+GT+  D  HREK AI++  SA
Sbjct: 1   MHRRSGEQVSGTSAFDVLHREKAAIRFLGSA 31


>10_08_1037 - 22477358-22478752
          Length = 464

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 628 RHTIIGHRGNPATVLYPPQSYHLHH 554
           RH+   HRG+P     PPQ  H HH
Sbjct: 227 RHSPAAHRGDPLPA-SPPQPQHQHH 250


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 544 NISKHPHSSTIRVQ*RTESQCHYAINILPEVTYVVTFD 431
           N +K P+SSTI +  R  + CH AI  + E T  +T++
Sbjct: 527 NWTKEPNSSTILMFFRILAVCHTAIPEVNEATGALTYE 564


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 74  VCGCTIQRDSFLLFCTYF*SENGFPRWCYG 163
           +CGC +   S  L C+++ SE  F  WC G
Sbjct: 906 LCGCVVSDQSGGLQCSFYDSEKVF-AWCIG 934


>04_01_0445 + 5812277-5813893
          Length = 538

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 215 LYGYFF-TMFKISPVCPRHHNTTAGSH 138
           L G+FF T F +    P HH TT G+H
Sbjct: 374 LGGFFFMTAFMLGLAVPYHHWTTPGNH 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,164,994
Number of Sequences: 37544
Number of extensions: 418409
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)