Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27559| Best HMM Match : DUF1352 (HMM E-Value=0.00015)               29   5.1  
SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   8.9  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_27559| Best HMM Match : DUF1352 (HMM E-Value=0.00015)
          Length = 140

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 592 WQGYPYGLLWYAFVLLASQVHFFQLYFSFNLLKAWRARG 708
           W+  P  +   AFV+   Q H   +Y++  L+ AW  +G
Sbjct: 101 WRVLPMKMAMVAFVI---QAHAVSIYYANKLISAWNTKG 136


>SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 661 GKNVLVMLIA-RRHTIIGHRGNPATVLYPPQ-SYHLHHHVTNISKHPHSSTIRVQ 503
           G+ VL   I      II    +P++ L P   SY  HHH  +   HP SS + ++
Sbjct: 15  GERVLAFTITITTIIIIITTSSPSSSLTPSSLSYQHHHHHHHYHHHPSSSLLSIE 69


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 622 TIIGHRGNPATVLYPPQSYHLHHHVTNISKHPHS 521
           +II H    +++++ P S  +HHH ++I  HP S
Sbjct: 347 SIIIHHHPSSSIIHHPSSI-IHHHPSSIIHHPSS 379


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 634 ARRHTIIGHRGNPATVLYP 578
           ARRH+II  RG P   LYP
Sbjct: 341 ARRHSIIYGRGQPVQSLYP 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,166,026
Number of Sequences: 59808
Number of extensions: 484056
Number of successful extensions: 996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)