Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical
           protein K05C4.2 protein.
          Length = 189

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +3

Query: 138 MASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKY 254
           M+SRG V   GT+G DF++R++VA  Y  SA  KS LK+
Sbjct: 1   MSSRG-VRAAGTDGTDFQNRQRVAQHYQESAQYKSILKW 38



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 601 YPYGLLWYAFVLLASQVHFFQLYFSFNLLKAW 696
           +P  ++WY F  +A Q+H F +YF  +L  AW
Sbjct: 152 FPMVIIWYIFFAVALQIHGFSMYFMHHLAAAW 183



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +2

Query: 347 EELQIPPPLWWEYIWCXXXXXXXXXXXAIKRNNIRHLRQYVYGIVALGFCPLL 505
           + L +P    WEY+WC           + +RN ++ L    Y    +G  P +
Sbjct: 71  DRLDMPSAYPWEYVWCFSFIPIVLAIYSFQRNKLKILHYAYYAEFVVGIFPCM 123


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 598 PATVLYPPQSYHLHHHVTNISKHPH 524
           P   +YP   +H H+ + ++ +HPH
Sbjct: 20  PMHHVYPSHHHHQHYQLPHLQQHPH 44


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 598 PATVLYPPQSYHLHHHVTNISKHPH 524
           P   +YP   +H H+ + ++ +HPH
Sbjct: 20  PMHHVYPSHHHHQHYQLPHLQQHPH 44


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 598 PATVLYPPQSYHLHHHVTNISKHPH 524
           P   +YP   +H H+ + ++ +HPH
Sbjct: 20  PMHHVYPSHHHHQHYQLPHLQQHPH 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,173
Number of Sequences: 27780
Number of extensions: 358506
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)