Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.42 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 598 PATVLYPPQSYHLHHHVTNISKHPH 524
           P+T  + P SYH H H  +   HPH
Sbjct: 306 PSTAGFLPPSYHPHQHHPS-QYHPH 329



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 580 PPQSYHLHHHVTNISKHPH 524
           PP  +H HHH T   +H H
Sbjct: 349 PP--HHHHHHQTQSLQHLH 365


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 GACRCYSRFLVYQQSNVTTYVTSGSMFMA*WHWDSVR 500
           G+CR   + L + +  + TY+ + S ++   H  S+R
Sbjct: 274 GSCRKTDQILYFIRGCLQTYLINASTYLNEVHTASLR 310


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 GACRCYSRFLVYQQSNVTTYVTSGSMFMA*WHWDSVR 500
           G+CR   + L + +  + TY+ + S ++   H  S+R
Sbjct: 312 GSCRKTDQILYFIRGCLQTYLINASTYLNEVHTASLR 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,024
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)