Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20743
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06526.1 68417.m00938 hypothetical protein                          29   3.2  
At1g80530.1 68414.m09439 nodulin family protein similar to nodul...    29   4.2  
At1g54650.1 68414.m06232 expressed protein similar to Actin-bind...    29   4.2  
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    29   4.2  
At1g08930.1 68414.m00994 early-responsive to dehydration stress ...    28   5.5  
At2g05940.1 68415.m00645 protein kinase, putative similar to aux...    27   9.6  

>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 235 TNLASSTCVLPPHTVPRDDGKALCRC 312
           T+  +  C+ PPHT+P  D  A C C
Sbjct: 288 TDHPTKECLYPPHTMPYMDDCAKCSC 313


>At1g80530.1 68414.m09439 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 561

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 591 VAGLPLWPIMVCLRAISITSTFFPTVLLV*FTKSLASSRSP 713
           V GLP W + V L   + ++++F T  LV   ++   SR P
Sbjct: 103 VLGLPFWLLFVALALATNSNSWFGTASLVTNMRNFPMSRGP 143


>At1g54650.1 68414.m06232 expressed protein similar to Actin-binding
           protein ABP140 (Swiss-Prot:Q08641) [Saccharomyces
           cerevisiae]
          Length = 299

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 580 PPQSYHLHHHVTNISKH 530
           P  S+HLHHH  N+SK+
Sbjct: 28  PSLSHHLHHHHQNLSKY 44


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 358 NSTAPLVGIHLVLVVATLVSWSISNQT*QHTSPQAVC 468
           +ST  L+ +  V+    L+ WS+ NQT +     ++C
Sbjct: 211 SSTEDLLNLRNVMRFPVLLDWSVGNQTCEQVGSTSIC 247


>At1g08930.1 68414.m00994 early-responsive to dehydration stress
           protein (ERD6) / sugar transporter family protein
           identical to ERD6 protein {Arabidopsis thaliana}
           GI:3123712; contains Pfam profile PF00083: major
           facilitator superfamily protein; contains TIGRfam
           TIGR00879: Sugar transporter
          Length = 496

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 470 YGIVALGFCPLLYAYCTTVGMFGDICHMMMKMIALRWI 583
           YG  + G  P L    T +G+ G I    M M  L WI
Sbjct: 376 YGFQSFGILPELTPIFTCIGVLGHIVSFAMGMGGLPWI 413


>At2g05940.1 68415.m00645 protein kinase, putative similar to
           auxin-regulated dual specificity cytosolic kinase
           [Lycopersicon esculentum] gi|14484938|gb|AAK62821
          Length = 462

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 580 PPQSYHLHHHVTNISKHPHSS 518
           P +S H HHH    S HP SS
Sbjct: 399 PRKSSHHHHHQQQQSNHPRSS 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,702
Number of Sequences: 28952
Number of extensions: 327348
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)