Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20741
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical
           protein EGAP2.1 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 105 ASRDDNERPQDTNDVIGSLAGKKFNN 28
           A  DD+ERP  TN++I  L  +KF+N
Sbjct: 51  AEEDDDERPPTTNEIIDDLV-EKFDN 75


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 657 IKLIKHMFNQVLLNCLSRKKLVKILIYAKCLLNFSHLQFIYEIKINLIDTYGPDTHTNID 478
           IKL K +  ++ LN L  + L++++    C  N +   +  +I   L  T   DTHT++D
Sbjct: 57  IKLNKTLSGELYLN-LKVRSLLRLMFNKACDRNIACEIYKNDISSRLT-TESDDTHTSVD 114

Query: 477 L 475
           L
Sbjct: 115 L 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,155
Number of Sequences: 27780
Number of extensions: 240134
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)