Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20741
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27090.1 68415.m03255 expressed protein contains Pfam domains...    28   5.1  
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ...    27   8.9  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    27   8.9  

>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 743

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 633 NQVLLNCLSRKKLVKILIYAKCLLNFSHLQFIYEIK 526
           ++ L  C  RKK V+  +  +CLL  +H+ ++  +K
Sbjct: 11  DKALQLCRERKKFVQQALDGRCLLAAAHVSYVQSLK 46


>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 685

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 19  CLSIIEFFPSQGTNNIVSVLWPLVVVTRCSAC 114
           C SIIE F  QG  + + + W     TRC  C
Sbjct: 474 CASIIEPFDYQGHQHPLFLPWDTKKKTRCQMC 505


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 19  CLSIIEFFPSQGTNNIVSVLWPLVVVTRCSAC 114
           C SIIE F  QG  + + + W     TRC  C
Sbjct: 492 CASIIEPFDYQGHEHPLFLPWETEKETRCQMC 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,033,018
Number of Sequences: 28952
Number of extensions: 201970
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)