Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20740
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    27   2.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   2.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.6  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   4.8  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.3  
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    26   6.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.4  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   8.4  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 608 EEVQGEAGPFDRTGKNATEEGEIETDYGPR 697
           EE+Q   G ++RT     ++ ++ETD+ P+
Sbjct: 252 EEIQSSGGAWERTKVFVAKKSDMETDFIPQ 281


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 316 QQVLQCEEAFLNAKLQSKEEASSRIDVQVKT 408
           Q++++CE + +    Q KEE  S +D +++T
Sbjct: 55  QKMIECEPSCVEYFRQRKEELESHVDSEIET 85


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 694 WSIIGFDFSFLCSIFTGSIKWSSFSLY 614
           +SI+G  F F+CS+  G I + S   Y
Sbjct: 533 FSILGAHFRFICSLNFGKISFISHEFY 559


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 232 SFQSGRRHKESCICATCVVRLRDAYAFRQQVLQCEEAFLNAKLQSK 369
           S+++    KE C  A C     D Y  +Q  +  + AF +AK  +K
Sbjct: 39  SYKTETSDKELCQTAACATSCSDWYPQQQTHMPHQNAFDSAKATAK 84


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 558 RPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKPIMDHD 698
           +P  +  AGKRD +  +KK R++         + +R  K  P+ D++
Sbjct: 140 KPLTSAAAGKRDKLTELKKRRQER----SARSVSERTRKRSPVSDYE 182


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 582  GKRDLVNRMKKYREKLDHLIEPVKMLQ 662
            GKR    R K+   K DH+++P+  LQ
Sbjct: 1300 GKRGKPLRSKELNRKHDHIVQPMGKLQ 1326


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = +3

Query: 519 KVASDYEGTKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKPIMDHD 698
           KVA     +   +RP+  ++A K     +   +  +LD     V  +  +   K I D +
Sbjct: 20  KVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDN 79

Query: 699 TMIY 710
           T+++
Sbjct: 80  TLVF 83


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 517 TSLCRAASGPLK*HYSPYRMVRLCRPLACQSHLLAARF 404
           TSL R  S   K   SP ++ +L RP+   + +L+ +F
Sbjct: 764 TSLERVKSNTKKESNSPRQVSKLKRPIGASNKILSGKF 801


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 140 IKKCRLLTSEYEWMGQKEVYSEMLMDCFGLLLSNLDGD-TRSRA 268
           IKK   L    E +G +EV + + + C   LL NL+GD T S+A
Sbjct: 321 IKKEHWLPEYIEKLGFEEVEARLELLCREELLYNLEGDFTFSKA 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,801
Number of Sequences: 5004
Number of extensions: 53235
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)