Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20740
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0173 + 13086309-13086576,13088818-13088906                       29   3.8  
04_01_0236 - 3069062-3069625,3070339-3070386                           29   5.0  
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    28   6.6  

>09_03_0173 + 13086309-13086576,13088818-13088906
          Length = 118

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 226 FASFQSGRRHKESCICATCVVRLRDAYAFRQQVLQCEEAFLNAKLQSKEEASSRIDV 396
           F   + G RH E C  AT   R  D      +  + EE   + K    +EA+S  DV
Sbjct: 40  FLGVREGNRHFEECEAATKAARAADQRKMDVERARQEELVGSKKAAPPKEANSEPDV 96


>04_01_0236 - 3069062-3069625,3070339-3070386
          Length = 203

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +2

Query: 74  TTIAGKGKGPIVDPALCRCCRSIKKCR------LLTSEYEWMGQKEVYSEMLMDCFGLLL 235
           T   G GK P  D  +  CC   ++CR       +T     M +  V    L+  F LLL
Sbjct: 7   TNTTGDGKAP--DKVISECCGGRRRCRGGGSPGRVTISTYLMQEGAVSCTYLIQDFRLLL 64

Query: 236 SNLDGDTRSRA 268
           + L G +RSR+
Sbjct: 65  TGL-GSSRSRS 74


>10_06_0102 +
           10758601-10758948,10759051-10759257,10759349-10759507,
           10759617-10759709,10759913-10760008,10760457-10760724,
           10760805-10761047,10761298-10761422,10761499-10761615,
           10761705-10761779,10761886-10761942,10762035-10762139,
           10762244-10762330,10762790-10763047,10763075-10763263,
           10763418-10763528,10763640-10763729,10763814-10763990,
           10764075-10764152,10764412-10764726,10764819-10765162,
           10765304-10765541,10765631-10765998,10766106-10766316,
           10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = -1

Query: 311 NAYASLSLTTHVAHMHDSLCLRPDWKEANQNSPLTSLNK-----LLFDPSIRIQML--KV 153
           N YA++ L   +A       + P W  A++N  L    K      L  PS  +  L  K+
Sbjct: 106 NNYANVQLIVEIAERTHVSAVWPGWGHASENPELPDALKEKGIIFLGPPSAAMAALGDKI 165

Query: 152 GTSL*SDNIGITPGLLWA 99
           G+SL +   G+ P L W+
Sbjct: 166 GSSLIAQAAGV-PTLPWS 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,924
Number of Sequences: 37544
Number of extensions: 343514
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)