Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20740
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)               31   0.72 
SB_35810| Best HMM Match : Ribosomal_L11_N (HMM E-Value=6.8)           29   2.9  
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)                     29   3.9  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.7  
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 28   6.7  
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)           28   8.9  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   8.9  

>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 567  KAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKPIMDHD 698
            KA V    DL   + K+   L  L +P++ L RKE   P  DHD
Sbjct: 904  KAAVQRLLDLAQYLAKFLPHLSDLTKPLRDLTRKEADWPSADHD 947


>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
          Length = 413

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 262 SCICATCVVRLRDAYAFRQQVLQCEEAFLNAKLQSKEEASSRIDVQVK 405
           S I   CV + ++  AFR ++ Q EE   N  L    E SS    ++K
Sbjct: 159 SVISPACVAKEKEYLAFRSKIAQIEETLKNGNLTEIAELSSAYIAELK 206


>SB_35810| Best HMM Match : Ribosomal_L11_N (HMM E-Value=6.8)
          Length = 111

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 543 TKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKP 683
           TKKL+     ++A +++++N MKK    LD  IE +K    + K+KP
Sbjct: 18  TKKLE----IELAEQKEILNNMKKTEADLDREIELLKQELEEAKTKP 60


>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 638 DRTGKNATEEGEIETDYGPRHDDLYERGHD 727
           D  G+N  E GE   + G  HDD +ERG D
Sbjct: 334 DIIGENGAETGEKRLETGGSHDD-FERGSD 362


>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
          Length = 652

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 312 ECVRVSQSDNACRTYARLLVSPSRLERSKPKQSINI 205
           +C+ V++S   C  +   LVSP+  + SK K S+ +
Sbjct: 456 QCMIVTRSSKPCTPHKEKLVSPTSQQESKTKLSLKL 491


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 285 CQTERRVRIPSAGSTVRGGISKCQT 359
           CQT+  + IP+A   + G  SKC T
Sbjct: 143 CQTDPVLTIPNAAPPIEGATSKCDT 167


>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1410

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 125 RCCRSIKKCRLLTSEYEWMGQKEVYSEMLMDCFGLLLSNLDGDTR 259
           R  RSIKK  +  S Y  + Q+E+Y+  L+  F +++  L  DT+
Sbjct: 754 RHSRSIKKTNIRRSMYLALEQQEIYT-FLVAVFDVIVDKLRHDTK 797


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 637 KWSSFSLYFFMRLTRSLLPATF 572
           +W +FS YFF+  + SL+P  F
Sbjct: 621 RWYAFSAYFFLFASSSLMPVIF 642


>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
          Length = 721

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 493 GPLK*HYSPYRMVRLCRPLACQSHLLAARFSLERQSCLRLLLYFVVWH 350
           GP   H+   ++ + C  +  ++ L    + L RQ C R LL +   H
Sbjct: 653 GPTAFHFEESKITQFCPEITAKARLFDFTWILCRQPCHRSLLMYPTTH 700


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 216 SINISE*TSF*PIHSYSDVKSRHFFIERQHRHNAGSTMGPLPFPAIVVTA 67
           S N+++  ++   +   +  ++ FF E    + AG T+GPLP P  VV A
Sbjct: 807 STNLADMNTYFDEYVLEESNAKQFFYE----YVAGVTIGPLPSPGYVVPA 852


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,224
Number of Sequences: 59808
Number of extensions: 408887
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)