Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20740
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 489 GPEAARHKDVKVASDYEGTKKLKRPRKAKVAGKRDLVNRMKKY-REKLDHL 638
           GPE +RH  + + +  +   K    R+ K A  ++ ++R +++ R +L+ L
Sbjct: 78  GPETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQL 128


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -3

Query: 177 HSYSDVKSRHFFIERQHRHNAGSTMGPLPFPAIVVTAIIYLI 52
           H+YS+    H  + +   +   +T+G    P  V+  + Y I
Sbjct: 184 HTYSETGPSHCVVCQNFFYQIYATLGSFYIPLFVMIQVYYKI 225


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 706 IIVSWSIIGFDFSFLCSIFTGSIKWSSFSLYFFMRLTRSLLP 581
           +I++  + G    F+C   T +       LY F    R ++P
Sbjct: 13  VIINVLLHGQVICFVCKDITSTSALYRLKLYLFCDYDRDIIP 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,205
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)