Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20740
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49050.1 68416.m05358 lipase class 3 family protein / calmodu...    30   1.4  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    30   1.4  
At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein bet...    29   2.4  
At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein bet...    29   2.4  
At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    29   2.4  
At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase, mitoc...    29   4.2  
At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase, mitoc...    29   4.2  
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim...    28   5.5  
At1g76060.1 68414.m08833 complex 1 family protein / LVR family p...    28   5.5  
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel...    28   7.3  
At1g13030.1 68414.m01511 sphere organelles protein-related conta...    28   7.3  
At5g19250.1 68418.m02292 expressed protein                             27   9.6  
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro...    27   9.6  
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.6  

>At3g49050.1 68416.m05358 lipase class 3 family protein /
           calmodulin-binding heat-shock protein, putative
           calmodulin-binding heat-shock protein, Nicotiana
           tabacum, PIR:T04107
          Length = 477

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 602 PHEEVQG-EAGPFDRTGKNATEEGEIETD 685
           PH E    E G FD+T ++ TEE E+ET+
Sbjct: 388 PHAESMAYEYGTFDKTQEDETEEEEVETE 416


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 244 GRRHKESCICATCVVRLR 297
           GR HK  C+CA CV++ R
Sbjct: 346 GRHHKSDCMCAICVLKRR 363


>At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 537 EGTKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSK 680
           EGT K K P++   A  RDL+NRM   +EK+  +++  + +   E  K
Sbjct: 21  EGTLKYKDPKQPLGARIRDLMNRM-TLQEKIGQMVQIERSVATPEVMK 67


>At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 537 EGTKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSK 680
           EGT K K P++   A  RDL+NRM   +EK+  +++  + +   E  K
Sbjct: 21  EGTLKYKDPKQPLGARIRDLMNRM-TLQEKIGQMVQIERSVATPEVMK 67


>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 685 IGFDFSFLCSIFTGSIKWSSFSLYFFMRLTRSLLPAT-FAFLGL 557
           +   F  L S F G+I W++  L F+ R   +LL +  + FLG+
Sbjct: 137 LSLQFLALPSFFVGTILWAALFLQFWKRKNAALLASQGYRFLGM 180


>At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase,
           mitochondrial / glyoxalase II (GLX2-1) identical to
           SP|O24495 Hydroxyacylglutathione hydrolase,
           mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
           (Glx II) {Arabidopsis thaliana}
          Length = 313

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 394 RQSCLRL-LLYFVVWHLEMPPRTVEPA 317
           RQ CLR  LLY V+W L MP +T+  A
Sbjct: 15  RQLCLRKSLLYGVMWLLSMPLKTLRGA 41


>At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase,
           mitochondrial / glyoxalase II (GLX2-1) identical to
           SP|O24495 Hydroxyacylglutathione hydrolase,
           mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
           (Glx II) {Arabidopsis thaliana}
          Length = 331

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 394 RQSCLRL-LLYFVVWHLEMPPRTVEPA 317
           RQ CLR  LLY V+W L MP +T+  A
Sbjct: 33  RQLCLRKSLLYGVMWLLSMPLKTLRGA 59


>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 603

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 251 LRPDWKEANQNSPLTSLNKLLFDPSIRIQMLKVGT 147
           L+ +WKE  ++    +L+  +FDP+I+ +M K+ T
Sbjct: 242 LQNNWKELARDISTGTLSSRIFDPAIKNRMSKILT 276


>At1g76060.1 68414.m08833 complex 1 family protein / LVR family
           protein contains Pfam PF05347: Complex 1 protein (LYR
           family)
          Length = 157

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 576 VAGKRDLVNRM-----KKYREKLDHLIEPVKMLQRKEKSKPIMDHDTMIYMN 716
           +AG+ DL+NR      +++  +    +E +      +K KPI+DHD   ++N
Sbjct: 12  LAGRLDLMNRSGAVSTRRFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLN 63


>At5g60530.1 68418.m07590 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 531 DYEGTKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSK 680
           D E   K K+ ++ K   +++  ++ +K +EK D L +  K  +RKEK +
Sbjct: 67  DKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKER 116


>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 652 FTGSIKWSSFSLYFFMRLTRSLLPATFAF-LGLFSFFVPS*SLATL 518
           +TGS+K      Y  + LT S  P   +F +G  S++ P   + TL
Sbjct: 416 YTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTL 461


>At5g19250.1 68418.m02292 expressed protein
          Length = 196

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 311 NAY-ASLSLTTHVAHMHDSLCLRPDWKEANQNSPLTS 204
           N+Y ASL+LTT + H H++ CL  +  +  +N P T+
Sbjct: 38  NSYRASLNLTTLI-HNHNAECLADEIADQFKNQPCTN 73


>At3g07540.1 68416.m00900 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 841

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 554 QLLRAFVVARDFDVLMSGGFRSSEIT 477
           QLL+ FV+ RDF  ++ G  +  E+T
Sbjct: 812 QLLKVFVIVRDFLKILEGVCKKMEVT 837


>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 219 VLVCFFPIWTETQGVVHMCDMRCQTERRVRIPSAGSTVRGGISKC 353
           V V  FP+W++      + +   +T  RVR  S G   RG I +C
Sbjct: 366 VPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIMRC 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,359
Number of Sequences: 28952
Number of extensions: 276935
Number of successful extensions: 836
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)