Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20738
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.86 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 99   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 221
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1
          protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 45 VNYKLLNTKNPSAR 4
          V Y LLN  NP AR
Sbjct: 33 VEYVLLNEDNPCAR 46


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 239 APRHPLDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 349
           AP+ PLD++P      +  P G    P +F  G  G+
Sbjct: 21  APQSPLDMKPDASTLGQFSPQGP-NSPVSFSMGGHGS 56


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 187 CKSESPW*APVGSMPC 140
           C +E PW    G  PC
Sbjct: 351 CVNERPWSLYCGEPPC 366


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 33  IYSSHK*NKMREIVHIQAGQCGNQIGAKFWEI 128
           I +  + N+++  V I    C N   A+F+E+
Sbjct: 283 IEAKRRDNEIKMFVKIVDASCRNFTAARFFEL 314


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 131 LRRARHRPHRCLPWGL*LAVGAHQCILQ*SLRRQVR 238
           L   R   ++ LP+GL  AVG+    +   L  +VR
Sbjct: 416 LYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVR 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,355
Number of Sequences: 336
Number of extensions: 1848
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)