Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20738
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   116   1e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    71   9e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    59   2e-10
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    59   3e-10
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   1.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   2.6  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   3.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  116 bits (279), Expect = 1e-27
 Identities = 49/70 (70%), Positives = 57/70 (81%)
 Frame = +3

Query: 60  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 240 PRAILSTWSP 269
           PRA+L    P
Sbjct: 61  PRAVLVDLEP 70



 Score = 89.0 bits (211), Expect = 2e-19
 Identities = 36/46 (78%), Positives = 42/46 (91%)
 Frame = +2

Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
           +DLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAE
Sbjct: 66  VDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 70.5 bits (165), Expect = 9e-14
 Identities = 30/69 (43%), Positives = 46/69 (66%)
 Frame = +3

Query: 63  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 242
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 243 RAILSTWSP 269
           RAIL    P
Sbjct: 63  RAILIDLEP 71



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +2

Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGH 373
           +DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G+
Sbjct: 67  IDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +2

Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
           +DLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E
Sbjct: 72  VDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117



 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +3

Query: 60  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 221
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 222 SGGKYVPRAILSTWSP 269
             GK+VPR+I     P
Sbjct: 61  GQGKFVPRSIYVDLEP 76


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +2

Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
           +DLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G E
Sbjct: 68  VDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113



 Score = 57.6 bits (133), Expect = 7e-10
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 60  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 233
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 234 YVPRAILSTWSP 269
           YVPR+I     P
Sbjct: 61  YVPRSIYVDLEP 72


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 99  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 200
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 293 GPFGQIFRPDNFVFGQSGAG-NNWA 364
           GP+G +F P  F+F  +G    NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 227 RQVRAPRHPLDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 355
           R+V AP+H      GT    RS     +FR ++  FGQ   GN
Sbjct: 486 REVFAPKHARR-RLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 351 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 256
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,665
Number of Sequences: 5004
Number of extensions: 28403
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)