Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20738
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.57 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 125 LPELSSDLVAALTSLDMYDFPHFVLFM 45
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 65   PHFVLFM*TINYLTLKIXPH 6
            P   L   T N LT+K+ PH
Sbjct: 1370 PQITLTATTTNSLTMKVRPH 1389



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 266  APSREDGAGHVLAAGGFIVVY 204
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941



 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 295 SRADRVHGAGLQVERMARGTYLP 227
           +R D  +G G  VE  ARG   P
Sbjct: 11  NRVDFSNGTGAVVECQARGNPQP 33


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 174 DSDLQLERINVYYNEASGGKYVPRAILSTWSP 269
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 346 AGLSEDEVVRTEDLSERSRADRVHGAGLQVERMARG 239
           AGL+E+EVV  + ++E   ++        V R+  G
Sbjct: 62  AGLTEEEVVLAKTIAECPESENTVQKAALVLRLREG 97


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 QLERINVYYNEASGGKYVPRAILSTWSPA 272
           QL+R ++ +N    G+  PR+  ++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,258
Number of Sequences: 438
Number of extensions: 2175
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)