Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20738
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 128 2e-30
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 125 1e-29
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 124 2e-29
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 124 2e-29
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 124 3e-29
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 123 4e-29
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 121 2e-28
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 119 9e-28
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 118 1e-27
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 62 2e-10
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 62 2e-10
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 61 3e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 61 3e-10
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 58 2e-09
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 58 2e-09
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 56 9e-09
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 56 9e-09
At4g37190.1 68417.m05265 expressed protein 31 0.39
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 30 0.68
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 29 0.89
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 3.6
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 27 4.8
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 4.8
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 6.3
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 6.3
At5g06170.1 68418.m00688 sucrose transporter, putative / sucrose... 26 8.3
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 128 bits (308), Expect = 2e-30
Identities = 55/71 (77%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 236
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 237 VPRAILSTWSP 269
VPRA+L P
Sbjct: 61 VPRAVLMDLEP 71
Score = 103 bits (248), Expect = 3e-23
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 67 MDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 112
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 125 bits (302), Expect = 1e-29
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 240 PRAILSTWSP 269
PRAIL P
Sbjct: 61 PRAILMDLEP 70
Score = 103 bits (246), Expect = 6e-23
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (299), Expect = 2e-29
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 101 bits (241), Expect = 2e-22
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (299), Expect = 2e-29
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 101 bits (241), Expect = 2e-22
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 124 bits (298), Expect = 3e-29
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 104 bits (249), Expect = 3e-23
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 123 bits (297), Expect = 4e-29
Identities = 55/71 (77%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 236
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 237 VPRAILSTWSP 269
VPRA+L P
Sbjct: 61 VPRAVLMDLEP 71
Score = 105 bits (251), Expect = 1e-23
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 67 MDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 112
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 121 bits (292), Expect = 2e-28
Identities = 54/70 (77%), Positives = 59/70 (84%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 104 bits (249), Expect = 3e-23
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 119 bits (286), Expect = 9e-28
Identities = 51/70 (72%), Positives = 60/70 (85%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 104 bits (249), Expect = 3e-23
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 118 bits (285), Expect = 1e-27
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 239
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 240 PRAILSTWSP 269
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 104 bits (249), Expect = 3e-23
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 66 MDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 61.7 bits (143), Expect = 2e-10
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +3
Query: 63 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 242
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 243 RAILSTWSP 269
RA+L P
Sbjct: 63 RALLIDLEP 71
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKG-HYTEGAESSI 400
+DLEP ++ +++G + ++ +N GAGNNWA G H +G E I
Sbjct: 67 IDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVEEEI 118
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 61.7 bits (143), Expect = 2e-10
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +3
Query: 63 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 242
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 243 RAILSTWSP 269
RA+L P
Sbjct: 63 RALLIDLEP 71
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKG-HYTEGAESSI 400
+DLEP ++ +++G + ++ +N GAGNNWA G H +G E I
Sbjct: 67 IDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVEEEI 118
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 61.7 bits (143), Expect = 2e-10
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 233
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFLDLEP 72
Score = 57.6 bits (133), Expect = 3e-09
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
LDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGRE 113
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 60.9 bits (141), Expect = 3e-10
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 233
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.4 bits (130), Expect = 7e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 60.9 bits (141), Expect = 3e-10
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 233
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.4 bits (130), Expect = 7e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 233
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.0 bits (129), Expect = 9e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 58.4 bits (135), Expect = 2e-09
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 233
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.0 bits (129), Expect = 9e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 56.0 bits (129), Expect = 9e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 233
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.0 bits (129), Expect = 9e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 56.0 bits (129), Expect = 9e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 233
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 YVPRAILSTWSP 269
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 56.0 bits (129), Expect = 9e-09
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 LDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 391
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.39
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 60 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 149
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 29.9 bits (64), Expect = 0.68
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = -1
Query: 230 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 51
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
Query: 50 FM*TINYLTLKIXP 9
+ TL I P
Sbjct: 195 INGRGSGATLNIEP 208
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 29.5 bits (63), Expect = 0.89
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -1
Query: 263 PSREDGAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL 90
P R+ H++ + F+ ++ L Q V +GT GV+ + D+LP S D VA L
Sbjct: 6 PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63
Query: 89 ------TSLDMYDFPHFVL 51
+ +YD H VL
Sbjct: 64 LKSAKIRNTRIYDADHSVL 82
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 66 EIVHIQAGQCGNQIGAKFWEIISD 137
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 108 GAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILST 260
G + W I+ + TG Y DL ER+++ +++A +Y P + T
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKPAPAVIT 95
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 81 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 173
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 26.6 bits (56), Expect = 6.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 231 KYVPRAILSTWSPAPWTLSA 290
+++P L+ W+ PWT+ A
Sbjct: 326 EFIPNIYLAVWTTTPWTMPA 345
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 160 PVGSMPCSSEMISQNLAPIW 101
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
>At5g06170.1 68418.m00688 sucrose transporter, putative /
sucrose-proton symporter, putative similar to
sucrose-proton symporter SUC1 [Arabidopsis thaliana]
GI:407094, sucrose transporter [Arabidopsis thaliana]
GI:12057172; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 491
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 260 SREDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTS 84
S GAG L+ G V A+ + + G G +DA+ G +LP +AAL S
Sbjct: 428 SSSSGAGQGLSLG----VLNMAIVIPQMIVSFGVGPIDALFGGGNLPGFVVGAIAALIS 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,549,041
Number of Sequences: 28952
Number of extensions: 169915
Number of successful extensions: 523
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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