Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20737
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    96   2e-21
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    91   7e-20
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   2.8  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   2.8  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   5.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   8.7  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    24   8.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    24   8.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 45/57 (78%), Positives = 48/57 (84%)
 Frame = +3

Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
           PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130



 Score = 87.4 bits (207), Expect = 8e-19
 Identities = 36/65 (55%), Positives = 51/65 (78%)
 Frame = +1

Query: 64  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 243
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 244 AIENP 258
            IENP
Sbjct: 70  TIENP 74


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 91.1 bits (216), Expect = 7e-20
 Identities = 41/57 (71%), Positives = 47/57 (82%)
 Frame = +3

Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
           PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129



 Score = 87.4 bits (207), Expect = 8e-19
 Identities = 35/69 (50%), Positives = 53/69 (76%)
 Frame = +1

Query: 52  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 231
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 232 RAVVAIENP 258
           R +  IENP
Sbjct: 65  RVIATIENP 73


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 270 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 133
           RT   +    DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 267 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 133
           T Q ++D  D+   +  +    T V+HMG+     +D G++   N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 195 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 46
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 155  MSTNDVLMVPM*STCVVPGKNLFWLLVL 238
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +3

Query: 189 DQLASYLGKTCSGCSCCRSHREPADVFVISSRPFGQRAVLKFA--AHTGATPIAGRFTPG 362
           D  AS L  + S        RE     V +  P      LK +   H  A+P+      G
Sbjct: 708 DFKASNLNDSSSNVHSIFQTRETTSPSVQNKTPTKYHRELKSSKDGHEQASPLVSSSPSG 767

Query: 363 AFTNQIQAA 389
           +FT+QI  A
Sbjct: 768 SFTSQISPA 776


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 165 FVDIGLHLEVNIFCPKMGGCSKHFGDIFLVEGEHV 61
           F  I + ++V +F PK G C +  G I LV   H+
Sbjct: 69  FSFIWVRVDVLVFSPKKGDCLE--GKINLVSPSHI 101


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 264 HQRVLDGYDSTSSQNKFFPGTTQVDHMG 181
           H  + + Y   S+QN F PG T     G
Sbjct: 476 HASLSNSYAEPSTQNSFIPGLTSKSQDG 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,996
Number of Sequences: 5004
Number of extensions: 37313
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)