Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20737
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   101   2e-22
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    28   3.3  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     28   3.3  
AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical ...    27   5.8  
U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate fi...    27   7.7  
U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    27   7.7  
AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  101 bits (243), Expect = 2e-22
 Identities = 45/71 (63%), Positives = 57/71 (80%)
 Frame = +1

Query: 46  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 225
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 226 AARAVVAIENP 258
           AARA+ A+ENP
Sbjct: 61  AARAIAAVENP 71



 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +3

Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
           PADV V+S+RP+ QRA+LKFAAHTGAT I GRF+PG  TNQIQ  F+EPRLL++ DP
Sbjct: 71  PADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDP 127


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 16  RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 192
           R+V T+          +L ++  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203

Query: 193 NLRRTWEKLVLAARAVVAIENPL 261
               T   +V   +  +A+   L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 16  RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 192
           R+V T+          +L ++  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203

Query: 193 NLRRTWEKLVLAARAVVAIENPL 261
               T   +V   +  +A+   L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226


>AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical
           protein Y32B12B.6 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 244 AIENPLMCSSSHHGPSVSVLY*SLPRTQXLRLLXGVSHQVLLLTRFKLHSVNLVS*LYWT 423
           +I+  L   S+HH   V +L  S P    L++   +  +   + R K H +N  S  Y T
Sbjct: 91  SIQELLHDISAHHMNRVFLLLNSYPENSNLKIEQMLREETSFVARQKYHEMNWDSWYYIT 150

Query: 424 L 426
           L
Sbjct: 151 L 151


>U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform b protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
 Frame = +1

Query: 67  LALNEEDVTKMLAATTHLGAE--NVNFQMETYVYKR---RADGTHVINLRRTWEKLVLAA 231
           L + E+ +T+   A T +  E   ++ ++ET V  +   R++  H   L    E L  + 
Sbjct: 350 LRMFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSY 409

Query: 232 RA--VVAIENPLMCSSSHH-GPSVSV 300
           ++  V+   +PLM +SSHH G S S+
Sbjct: 410 QSDFVIDTPSPLMRTSSHHYGSSYSL 435


>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
 Frame = +1

Query: 67  LALNEEDVTKMLAATTHLGAE--NVNFQMETYVYKR---RADGTHVINLRRTWEKLVLAA 231
           L + E+ +T+   A T +  E   ++ ++ET V  +   R++  H   L    E L  + 
Sbjct: 350 LRMFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSY 409

Query: 232 RA--VVAIENPLMCSSSHH-GPSVSV 300
           ++  V+   +PLM +SSHH G S S+
Sbjct: 410 QSDFVIDTPSPLMRTSSHHYGSSYSL 435


>AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical
           protein Y39G8B.10 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 177 WYPCDQLASYLGKTCSGCS 233
           WY C     Y  KTC  CS
Sbjct: 156 WYKCSDRIKYCPKTCGYCS 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,637,646
Number of Sequences: 27780
Number of extensions: 233180
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)