Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20737
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   3.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.9  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 186 CDQLASYLGKTCSGCSCCRSHREPADVFVISSRPFGQRAV 305
           CD      G  CS  S   S  +  + FV  S+ F +R++
Sbjct: 7   CDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSI 46


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 37  SATMSGGLDVLALNEEDVTKML 102
           S TMS  L  LALN +DV K L
Sbjct: 310 STTMSNALYELALN-QDVQKKL 330



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 150 LHLEVNIFCPK 118
           L  E+N FCPK
Sbjct: 330 LREEINTFCPK 340


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 274 MTNTSAGSRWLRQHEQPE 221
           + NT+  S+++R++  PE
Sbjct: 201 IVNTNYSSKYMREYNDPE 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,666
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)