Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20737
(432 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 87 5e-18
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 85 1e-17
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 85 1e-17
At2g22340.1 68415.m02651 hypothetical protein 33 0.11
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 1.4
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 27 7.2
At1g79670.1 68414.m09291 wall-associated kinase, putative simila... 27 7.2
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai... 26 9.6
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai... 26 9.6
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr... 26 9.6
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 87.0 bits (206), Expect = 5e-18
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = +3
Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +1
Query: 67 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 246
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 247 IENP 258
IENP
Sbjct: 72 IENP 75
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +3
Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 132
Score = 85.0 bits (201), Expect = 2e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +1
Query: 79 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 258
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +3
Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 132
Score = 85.0 bits (201), Expect = 2e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +1
Query: 79 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 258
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 117 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 236
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +1
Query: 37 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 216
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 217 LVLAARAVVAIENPLMCSSSHHGPSV 294
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
protein low similarity to cysteine-rich polycomb-like
protein (cpp1) [Glycine max] GI:4218187; contains Pfam
profile PF03638: Tesmin/TSO1-like CXC domain
Length = 360
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 147 GDLCLQTTC*WYPCDQLASYLGKTCSGCSC--CRSHREPAD 263
G C Q+ C CD AS G C+ C C C ++ E D
Sbjct: 68 GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKCD 106
>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 751
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 186 CDQLASYLGKTCSGCSCCRSHREPAD 263
CD S L K C G +CC++ + PAD
Sbjct: 166 CDGDKSRLDKICGGYTCCQA-KIPAD 190
>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 259
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 228 SQNKFFPGTTQVDHMGTISTSFV 160
SQ K+FPG+ ++ ++ TSFV
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFV 55
>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 288
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 228 SQNKFFPGTTQVDHMGTISTSFV 160
SQ K+FPG+ ++ ++ TSFV
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFV 55
>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
profile: PF00005 ABC transporters; similar to TAP1
protein (transporter of processed antigen) GB:AAD53033
(Oncorhynchus mykiss); identical to cDNA transporter
associated with antigen processing-like protein (TAP1)
GI:19335721
Length = 700
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 4 WHYTRLV-VTQISATMSGGLDVLA--LNEEDVTKML 102
W + L TQI A + GGL +LA + E +TK L
Sbjct: 364 WSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFL 399
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,383
Number of Sequences: 28952
Number of extensions: 210685
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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