Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20736
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.029
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    25   0.63 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.63 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.029
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 418 PSRQPPTAESGLGGTVAATGVPALVQARGHILKRFPSFP 534
           P    P+  SGLGG ++   +PAL    GH L+  P FP
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 SGERPWRHRCCYRRPSARSG*RTHI 512
           SGE+P+R   C RR S  S   TH+
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTHM 69



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 TVASTSDSGERPWRHRCCYRRPSARSG*RTHI 512
           T    + SGERP+R R C +  S  S    H+
Sbjct: 66  TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 97


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 SGERPWRHRCCYRRPSARSG*RTHI 512
           SGE+P+R   C RR S  S   TH+
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTHM 325



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 TVASTSDSGERPWRHRCCYRRPSARSG*RTHI 512
           T    + SGERP+R R C +  S  S    H+
Sbjct: 322 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 353


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 438 SGERPWRHRCCYRRPSARSG*RTHI 512
           +GERP++ + C R  + +   +TH+
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTHM 182


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 141 HPAPSHSSLSTPTL 100
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = -3

Query: 353 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFG 261
           HP  T+ YH   H+    F   H  +      FG
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFG 191


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 579 PVWSC*SPGLC 547
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,034
Number of Sequences: 336
Number of extensions: 2806
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)