Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20736
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   120   1e-28
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   120   1e-28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   6.2  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   8.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 54/59 (91%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +3

Query: 81  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 254
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 510 IEKIPELPLVVADKVQEINKTKQAV 584
           IE+IPE+PLVV D VQ   KTK+AV
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAV 168



 Score = 33.1 bits (72), Expect = 0.031
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 451 LGGTVAATGVPALVQARGHILKRFPSFP 534
           +   VAA+GVP+L+ ARGH ++  P  P
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVP 151


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 54/59 (91%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +3

Query: 81  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 254
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 510 IEKIPELPLVVADKVQEINKTKQAV 584
           IE+IPE+PLVV D VQ   KTK+AV
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAV 168



 Score = 33.1 bits (72), Expect = 0.031
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 451 LGGTVAATGVPALVQARGHILKRFPSFP 534
           +   VAA+GVP+L+ ARGH ++  P  P
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVP 151


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 382 YVRPHEALAALAPSRQPPTAESGLGGTVAATGVPALVQARGH 507
           +  PH  L + AP  QP   E     TV     P+    +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 142 APCTVSLFSEYTDTKGRATDRLISLL 65
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 80  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 190
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 400 ALAALAPSRQPPTAESGLGGTVAAT 474
           AL+ LAP  Q  TA   + GTV  T
Sbjct: 130 ALSVLAPGYQSETAPPSIRGTVVVT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,695
Number of Sequences: 5004
Number of extensions: 44363
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)