Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20736
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 129 2e-30
07_01_0578 + 4295386-4296489,4297394-4297507 128 2e-30
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.042
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.39
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.69
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.91
11_01_0748 + 6299776-6300042 30 1.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.6
04_01_0208 + 2596110-2596928 29 2.1
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 2.1
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 2.8
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 3.7
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 29 3.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.7
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 4.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 6.4
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 6.4
05_05_0015 + 21530547-21531047 28 6.4
05_04_0292 + 19893895-19894983 28 6.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 8.5
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 8.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 129 bits (311), Expect = 2e-30
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHRRVN
Sbjct: 61 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVN 119
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 84 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 251
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 510 IEKIPELPLVVADKVQEINKTKQAV 584
IE +PE PLVV+D ++ I KT Q++
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSI 171
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 451 LGGTVAATGVPALVQARGHILKRFPSFP 534
+ +AAT VP+LV ARGH ++ P FP
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP 154
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 128 bits (310), Expect = 2e-30
Identities = 54/59 (91%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WHRRVN
Sbjct: 62 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVN 120
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +3
Query: 93 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 251
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 510 IEKIPELPLVVADKVQEINKTKQAV 584
IE +PELPLV++D + I KT QA+
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAI 172
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 451 LGGTVAATGVPALVQARGHILKRFPSFP 534
+ +AAT VP+LV ARGH ++ P P
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELP 155
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +2
Query: 242 REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 382
RE G G A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 56 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 211
ASL N + P+F V L G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 56 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 211
ASL N I +PTF +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.91
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 134 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIP 313
+G ++A + + P GP ++ +++L A RE A + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 314 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>11_01_0748 + 6299776-6300042
Length = 88
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 224 LEAALL--REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 379
LEA L+ R G G + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>04_01_0208 + 2596110-2596928
Length = 272
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Frame = +2
Query: 242 REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTKP-WRRW 415
R +G G + E GR GGG + A G R +P WRRW
Sbjct: 118 RGRGGGCEAEGEDGAAGRRSGEEGEAAGGGRRGGKRRAMAGTRLRRSPCETEGRPGWRRW 177
Query: 416 HRR 424
RR
Sbjct: 178 RRR 180
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 341 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVLGH 213
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGG-MVNYGGGAPYYAAH 184
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 218 QELEAALLREQGAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 382
+++ A ++G G S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 383 MFAPTKP-WR 409
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 56 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 211
ASL N I +PT +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 198 DVHVSMSKNSRQPYCVSKELVTKPVLNHGVL 290
DVH+ +++NSR Y ++K+LV HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 257 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 361
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 56 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 211
ASL+ N ++ +PT V L ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 398 SWGRTYVHHDTCYRRHPDRTYEYHH 324
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 6.4
Identities = 30/93 (32%), Positives = 38/93 (40%)
Frame = +2
Query: 149 APPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPRVRGG 328
APPV V A+ G + +E E + E+G G G GR R RGG
Sbjct: 8 APPVLVGWAYGRGGVEETETETEEEEEWGVEMERGRGR-------GRGRGRGRGRGRRGG 60
Query: 329 GTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRV 427
G+G RG AP+ P +R RRV
Sbjct: 61 AVRGRGRGRGRCRGRGRSRAAPSPPAKR--RRV 91
>05_05_0015 + 21530547-21531047
Length = 166
Score = 27.9 bits (59), Expect = 6.4
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +2
Query: 203 SRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPR--VRGGGTHRSGQGAFGNMCRG 376
+RF L+ AL A +TS W GR R+PR V G G G + RG
Sbjct: 76 TRFEYGILKMALRMAVAAAPKTSHRRWRQGRWRRRLPRHPVADGIEDSDGGGGSRALLRG 135
Query: 377 GRMFAPTKPWR-RW 415
R + WR RW
Sbjct: 136 WRR---GRLWRQRW 146
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 189 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 97
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 391 PHEALAALAPSRQPPTAESGLGGTVAATGVPA 486
P A +AP PP G+GG G PA
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 PDRTYEYHHHGHAEFGRQHVQYPMIQH 270
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,234
Number of Sequences: 37544
Number of extensions: 401100
Number of successful extensions: 1615
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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