Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20736
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 130 8e-31
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.13
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.53
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 2.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.8
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 3.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 5.0
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 5.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 5.0
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 6.6
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 6.6
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 28 6.6
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 8.7
SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 27 8.7
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 130 bits (314), Expect = 8e-31
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH +VN
Sbjct: 55 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVN 113
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +3
Query: 90 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 251
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 510 IEKIPELPLVVADKVQEINKTKQAV 584
IEKI E+PLV++D ++ + KT AV
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAV 165
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 463 VAATGVPALVQARGHILKRFPSFP 534
+AA+ +PAL+ ARGH +++ P
Sbjct: 125 LAASALPALIMARGHRIEKIAEVP 148
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 264
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 255
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 341 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDQLLAHAVGLP-RVLGHRNVN 201
+Y++HHHG E Q V I + W +L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 285
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 382
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +2
Query: 251 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 284 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 157 GRGLAAPCTVSLFSEYTDTKGRATDRLI 74
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 66 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 239
S +M L R + Y+E ++ + LP V AP+ D+V +V S K S + Y
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531
Query: 240 --CVSKELVTK 266
C S E V K
Sbjct: 532 ENCPSVEAVVK 542
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 377 HHDTCYRRHPDRTYEYHHHGH 315
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 365 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 383 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQ 288
Y HH + +H + +HHH H H Q
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQ 288
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 412 LAPSRQPPTAESGLGGTVAATGVPAL 489
+A R PP+ G GTV+ GVP L
Sbjct: 169 MAMHRMPPSTLMGATGTVSTVGVPGL 194
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 248 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 349
QGAG +T ++W R+ R GTHR+G+
Sbjct: 948 QGAG-RTGRDAWNGTHGPGRMARDARDGTHRTGR 980
>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 314 AEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVLGHRNVNIIDQVR 183
AEFG H+++ + H G+Q+ A V HR ++DQV+
Sbjct: 322 AEFGTLHLEFVYLSHITGNQVYAKKV-------HRVREVVDQVQ 358
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 245 EQGAGHQTSAESWGTGRAVARIPRVRGGGTHRS-GQGAFG 361
E G G + W T R VA RVR G R QGA G
Sbjct: 258 EGGRGVREGLGYWATARVVAGRKRVRATGPRRGWSQGARG 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,532,129
Number of Sequences: 59808
Number of extensions: 385820
Number of successful extensions: 1241
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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