Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20736
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 332 YHHHGHAEFGRQHVQY 285
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 344 GQGAFGNMCRGGRMFAP 394
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 411 VGTVASTSDSGERPWRHRCCYRRPSARSG*RTHIEKIPELPLVVA 545
           + +  S+S S   P +      +PS R+G  T+ +++  L   V+
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVS 561


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 314 AEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVL 219
           +E+G  +VQY  +Q  F  + +A  +    VL
Sbjct: 287 SEYGANNVQYQGVQDIFNTESIAKIMSKNGVL 318


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 314 AEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVL 219
           ++FG  +VQY   +     Q LA AV    VL
Sbjct: 284 SQFGENNVQYQGSEDILNTQSLAKAVSKNGVL 315


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 522 ESFQYVSSSLNERWDAGS 469
           ESF Y    L  RW  G+
Sbjct: 135 ESFSYHKQKLRLRWGTGA 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 522 ESFQYVSSSLNERWDAG 472
           ESF Y    +  +W+AG
Sbjct: 157 ESFGYTMRDIRYKWNAG 173


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 506 TY*KDSRASPGCSRQS 553
           T+ KD R  PG  RQS
Sbjct: 366 TWYKDGRQLPGTGRQS 381


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 506 TY*KDSRASPGCSRQS 553
           T+ KD R  PG  RQS
Sbjct: 366 TWYKDGRQLPGTGRQS 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,620
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)