Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20735
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 2e-40
 Identities = 69/84 (82%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GGISAAVSKTAVAPIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 435
           GG++AA+SKT VAPIER+KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN
Sbjct: 17  GGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGN 76

Query: 436 FANVIRYFPTQALNFAFKDKYKQV 507
            ANVIRYFPTQALNFAFKDKYKQV
Sbjct: 77  LANVIRYFPTQALNFAFKDKYKQV 100



 Score =  108 bits (259), Expect = 6e-26
 Identities = 49/72 (68%), Positives = 55/72 (76%)
 Frame = +3

Query: 522 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 701
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 702 IFKSDGLIGLYR 737
           IFK+DG+ GLYR
Sbjct: 166 IFKADGITGLYR 177



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 209 MSNLADPVAFAKDFL 253
           MS LADPVAFAKDFL
Sbjct: 1   MSGLADPVAFAKDFL 15



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +1

Query: 247 LPGGGISAAVSKTAVAPIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 426
           L  GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 427 RGNFANVIRYFPTQALNFAFKD 492
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +1

Query: 295 PIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 453
           P + ++  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 606 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 719
           YP D  R R+    G+   +  +    +C + I+K++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 2e-40
 Identities = 69/84 (82%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GGISAAVSKTAVAPIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 435
           GG++AA+SKT VAPIER+KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN
Sbjct: 17  GGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGN 76

Query: 436 FANVIRYFPTQALNFAFKDKYKQV 507
            ANVIRYFPTQALNFAFKDKYKQV
Sbjct: 77  LANVIRYFPTQALNFAFKDKYKQV 100



 Score =  108 bits (259), Expect = 6e-26
 Identities = 49/72 (68%), Positives = 55/72 (76%)
 Frame = +3

Query: 522 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 701
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 702 IFKSDGLIGLYR 737
           IFK+DG+ GLYR
Sbjct: 166 IFKADGITGLYR 177



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 209 MSNLADPVAFAKDFL 253
           MS LADPVAFAKDFL
Sbjct: 1   MSGLADPVAFAKDFL 15



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +1

Query: 247 LPGGGISAAVSKTAVAPIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 426
           L  GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 427 RGNFANVIRYFPTQALNFAFKD 492
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +1

Query: 295 PIERIKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 453
           P + ++  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 606 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 719
           YP D  R R+    G+   +  +    +C + I+K++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,469
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)