Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20734
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   112   5e-26
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    29   0.84 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.6  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    26   5.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   7.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   7.8  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  112 bits (269), Expect = 5e-26
 Identities = 53/85 (62%), Positives = 61/85 (71%)
 Frame = +3

Query: 258 LAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMK 437
           LAK  NVE  RDA+F+G+ INFTEDRAV H ALRN   KP+ VNG+DV   V  VL HMK
Sbjct: 76  LAKEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRKVLRHMK 135

Query: 438 EFSDQVVSGQWKGYTGKAITDVIKL 512
           EFSD V SG WKGYTGK I  ++ +
Sbjct: 136 EFSDAVRSGAWKGYTGKPIKSIVNV 160



 Score =  105 bits (252), Expect = 6e-24
 Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
 Frame = +2

Query: 464 AMEGVYGKSYNRRDQIGIGGSDVGPLMVTEALKPYAN-HLKVHFVSNIDGTHLAEVLKKL 640
           A +G  GK       +GIGGSD+GP+MVTEALKPY   +L++HFVSNIDGTHLAE LKK 
Sbjct: 145 AWKGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVSNIDGTHLAEALKKC 204

Query: 641 NPETALFIIASKTFTT 688
           +PET LF+IASKTFTT
Sbjct: 205 DPETTLFLIASKTFTT 220



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +1

Query: 70  AYQKLQQYYNVNSTKINMLQLFQQDRERFEKFSFCIP--TPNDGDILLDYSKNRINSDVF 243
           A+Q +Q +Y      + + +LF +D  RFEKFSF        DG IL D+SKN I  +  
Sbjct: 11  AWQAVQTHYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETV 70

Query: 244 KLLL 255
           +LL+
Sbjct: 71  ELLV 74


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 169 FCIPTPNDGDILLDYSKNRINSDVFKLLLISLRAEMLNK 285
           F +PT N GDIL  Y   R+     +L++ +   ++LN+
Sbjct: 265 FIVPTGNFGDILAGYYAKRMGLPTKQLVIATNENDILNR 303


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 7   CKVSVQYIVTMEPKINLKQDAAYQKLQQYYNVNSTKIN 120
           C V  +  + +E ++ +  DA Y++L+QY N+     N
Sbjct: 299 CSVCGRKRLAIEEELEVLYDAYYEELEQYANIQRNLAN 336


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 273 FCS*RDQEQLKNITVDTVLGIVK*DVSIVRCWDTE 169
           FCS  DQ +L ++ VD +  +      I R W TE
Sbjct: 84  FCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTE 118


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 324 TEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFS 446
           T     LH+A R  Q KP   N     + V + ++  K FS
Sbjct: 173 TNSNIKLHLAARKYQTKPEKFNENSSISQVTSAIKATKAFS 213


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 354 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVI 506
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ I
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGI 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,182
Number of Sequences: 5004
Number of extensions: 55687
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)