Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20734
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 75 5e-14
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 75 7e-14
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 48 9e-06
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 46 4e-05
12_02_0589 + 20850249-20850491,20850583-20851839 33 0.28
12_01_0740 + 6646471-6649407 33 0.28
12_01_0722 + 6355972-6359031 33 0.28
12_01_0741 + 6649988-6653065 32 0.37
08_02_0091 + 12258666-12258974,12259195-12259637,12259732-122598... 32 0.49
12_01_0727 + 6446283-6449300 31 0.86
12_01_0731 - 6516894-6517473,6517485-6519574 31 1.1
12_01_0715 - 6230393-6231559,6233234-6234553 31 1.1
01_01_1172 - 9324919-9325071,9325425-9325570,9326986-9327039,932... 31 1.1
12_01_0736 + 6582371-6585370 30 1.5
12_01_0718 + 6339982-6342981 30 1.5
01_01_0421 + 3181139-3184207 30 1.5
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 29 2.6
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 29 3.5
08_02_1275 - 25792148-25792227,25792457-25792488,25792590-257926... 29 4.6
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 29 4.6
12_01_0708 - 6137865-6140909 28 6.1
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 6.1
01_01_0423 + 3198075-3199010 28 8.0
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/85 (42%), Positives = 59/85 (69%)
Frame = +3
Query: 258 LAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMK 437
LA++ +++ + MFSG KIN TE+R+VLH+ALR +++ I +G +V +V V + +K
Sbjct: 83 LAEAAKLKEKIEKMFSGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVWGVKDKIK 142
Query: 438 EFSDQVVSGQWKGYTGKAITDVIKL 512
+FS+ SG W G TGKA+T+V+ +
Sbjct: 143 QFSETFRSGSWVGATGKALTNVVSV 167
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Frame = +2
Query: 473 GVYGKSYNRRDQIGIGGSDVGPLMVTEALKP------YANHLKVHFVSNIDGTHLAEVLK 634
G GK+ +GIGGS +GPL V AL+ A ++ F++N+D +A +K
Sbjct: 155 GATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIK 214
Query: 635 KLNPETALFIIASKTFTT 688
L+PET L ++ SKTFTT
Sbjct: 215 DLDPETTLVVVVSKTFTT 232
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/85 (42%), Positives = 58/85 (68%)
Frame = +3
Query: 258 LAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMK 437
LA++ +++ + MF G KIN TE+R+VLH+ALR +++ I NG +V +V V + +K
Sbjct: 89 LAEAAKLKEKIEKMFRGDKINSTENRSVLHVALRAPRDEVINSNGVNVVPEVWGVKDKIK 148
Query: 438 EFSDQVVSGQWKGYTGKAITDVIKL 512
+FS+ SG W G TGKA+T+V+ +
Sbjct: 149 QFSETFRSGSWVGATGKALTNVVSV 173
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Frame = +2
Query: 473 GVYGKSYNRRDQIGIGGSDVGPLMVTEALKP------YANHLKVHFVSNIDGTHLAEVLK 634
G GK+ +GIGGS +GPL V AL+ A ++ F++N+D +A +K
Sbjct: 161 GATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIK 220
Query: 635 KLNPETALFIIASKTFTT 688
L+PET L ++ SKTFTT
Sbjct: 221 DLDPETTLVVVVSKTFTT 238
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 509 IGIGGSDVGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFIIASKT 679
IGIGGS +GP V+EAL P LK+ F+ N D + + +L PE A L I+ SK+
Sbjct: 200 IGIGGSALGPQFVSEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKS 258
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 509 IGIGGSDVGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFIIASKT 679
IGIGGS +GP V EAL P L + F+ N D + + +L PE A L I+ SK+
Sbjct: 199 IGIGGSSLGPQFVAEALAPDNPPLMIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKS 257
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 28 IVTMEPKINLKQDAAYQKLQQYYNVNSTKINMLQLFQQDRERFEKFS 168
+V ME + + K+ AAY L Y S + N+ +++++ RE F KFS
Sbjct: 256 LVEMEKRASRKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFS 302
>12_01_0740 + 6646471-6649407
Length = 978
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F F IP P G I LDYS NR +S
Sbjct: 553 FNNFDGAIPVPQKGSITLDYSTNRFSS 579
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F F IP P G I LDYS NR +S
Sbjct: 594 FNNFDGAIPVPQKGSITLDYSTNRFSS 620
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F F IP P G + LDYS NR +S
Sbjct: 587 FNNFEGTIPIPEQGSVTLDYSNNRFSS 613
>08_02_0091 +
12258666-12258974,12259195-12259637,12259732-12259873,
12259985-12260209,12260340-12260402,12260486-12260560,
12261900-12262160
Length = 505
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 432 MKEFSDQVVSGQWKGYTGKAITDVIKLVLEAQMWVLSWSQKH*SPMLIILRSISYLTSTA 611
M +FS+ VV+G + Y I V L+ +WVL W H P + + I+ L +
Sbjct: 193 MVDFSE-VVAGIMR-YNPDIIISVHPLMQHIPLWVLKWQSLH--PKVPFVTVITDLNTCH 248
Query: 612 PTW 620
PTW
Sbjct: 249 PTW 251
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F IP P +G + LDYS NR +S
Sbjct: 580 FNNIEGAIPIPKEGSVTLDYSNNRFSS 606
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F IP P +G + LDYS NR +S
Sbjct: 587 FNNIEGTIPIPKEGSVTLDYSNNRFSS 613
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F IP P +G + LDYS NR +S
Sbjct: 502 FNNIEGVIPIPKEGSVTLDYSNNRFSS 528
>01_01_1172 -
9324919-9325071,9325425-9325570,9326986-9327039,
9327647-9327866,9327976-9328083
Length = 226
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 414 NAVLEHMK--EFSDQVVSGQWKGYTGKAITDVIKLVLEAQMWVLSW 545
NA+LE ++ E +QVV+G T +A+ K V EA++WV W
Sbjct: 37 NALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPW 82
>12_01_0736 + 6582371-6585370
Length = 999
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>12_01_0718 + 6339982-6342981
Length = 999
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F KF IP P + +LDYS NR +S
Sbjct: 598 FNKFEGPIPLPQNSGTVLDYSNNRFSS 624
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 504 IKLVLEAQMWVLSWSQKH*SPMLIILRSISYLTSTAP 614
++ V EAQ V S +H L +LR + Y STAP
Sbjct: 72 LRRVQEAQDEVASLKARHDGGQLYVLRLVQYFVSTAP 108
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 610 AVDVRYEM--DLKMISIGLQCFCDHERTHI*ASNTNLITSVIAFPVYPFHCPL 458
A++VR+ + D KMI L+CF + ER HI + T+ T + F + P+
Sbjct: 352 ALEVRFGVRNDAKMIPNVLRCFPNIERLHIKSGKTDETTGKLNFKFWQESGPI 404
>08_02_1275 -
25792148-25792227,25792457-25792488,25792590-25792651,
25792721-25792801,25793086-25793241,25793292-25793348,
25793349-25793510,25793586-25793648,25793742-25793804,
25793895-25793948,25794334-25794390,25794479-25794547,
25795053-25795166,25795245-25795316,25795406-25795527,
25796416-25796617
Length = 481
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Frame = +3
Query: 255 DLAKSRNVEQARDAMFSGQKINFTEDRAV-LHIALRNRQNKPILVNGKDVSTDVNAVLEH 431
D + N EQ R + + + E+ + LH+ + + V+G + + A H
Sbjct: 169 DALQKTNDEQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAH 228
Query: 432 MKEFSDQVVSGQWKGYTGKAITDVIKLVLEAQMWVLSWSQKH 557
E V+SG W + AI ++ E W++ H
Sbjct: 229 YME----VISGHWNEHGKPAINSFLQKASEKSAQAKKWAEPH 266
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F F IP P + +LDYS NR +S
Sbjct: 316 FNMFEGTIPLPQNSRFVLDYSNNRFSS 342
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 175 IPTPNDGDILLDYSKNRINS 234
IP P +G +LDYS N+ +S
Sbjct: 600 IPVPQEGSTMLDYSSNQFSS 619
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 519 EAQMWVLSWSQKH*SPMLIILRSISYLTSTAPTWL 623
+ ++ VL Q H P L LR I+Y ST+PTWL
Sbjct: 966 DVEISVLEGLQPH--PNLRHLRIINYRGSTSPTWL 998
>01_01_0423 + 3198075-3199010
Length = 311
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 154 FEKFSFCIPTPNDGDILLDYSKNRINS 234
F F IP P D +LDYS N +S
Sbjct: 35 FNMFEGPIPLPRDSGTVLDYSNNHFSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,705
Number of Sequences: 37544
Number of extensions: 350880
Number of successful extensions: 863
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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