Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20734
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19976| Best HMM Match : PGI (HMM E-Value=0)                         99   4e-21
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         88   7e-18

>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
          Length = 664

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/73 (58%), Positives = 54/73 (73%)
 Frame = +2

Query: 470 EGVYGKSYNRRDQIGIGGSDVGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPE 649
           +G   K +     IGIGGSD+GP M+ E L+ Y NHL +HFVSN+DG H+ E+LKK+NPE
Sbjct: 113 KGYTNKPFTDVVNIGIGGSDLGPAMIVEGLEYYKNHLNLHFVSNVDGDHVNEILKKINPE 172

Query: 650 TALFIIASKTFTT 688
           T LF+I SKTFTT
Sbjct: 173 TTLFVIVSKTFTT 185



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = +3

Query: 255 DLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHM 434
           DLA   N+++A +  FSG+ IN TE+RAVLH ALR   N  + V GK++  ++  V + +
Sbjct: 41  DLANEINLKEAIEDYFSGEIINKTENRAVLHTALRADVNDEVYVEGKNIIPEIFEVKKKI 100

Query: 435 KEFSDQVVSGQWKGYTGKAITDVIKL 512
             F++ +VSG  KGYT K  TDV+ +
Sbjct: 101 DFFTNDIVSGIRKGYTNKPFTDVVNI 126



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = +1

Query: 121 MLQLFQQDRERFEKFSFCIPTPNDGDILLDYSKNRINSDVFKLLLISLRAEM 276
           M ++F QD ER EKF          D ++DYSKN+I  +  K LLI L  E+
Sbjct: 1   MKEMFFQDSERVEKFHI-----EWEDFVIDYSKNKITEET-KGLLIDLANEI 46


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 44/59 (74%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
 Frame = +2

Query: 515 IGGSDVGPLMVTEALKPYANH-LKVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTT 688
           + G D GPLMVTEAL+PY    L VHFVSNIDGTHLA+ L +LNPET+LFIIASKTFTT
Sbjct: 102 VDGKD-GPLMVTEALQPYGKKGLNVHFVSNIDGTHLAKTLAELNPETSLFIIASKTFTT 159



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 26/67 (38%), Positives = 42/67 (62%)
 Frame = +1

Query: 52  NLKQDAAYQKLQQYYNVNSTKINMLQLFQQDRERFEKFSFCIPTPNDGDILLDYSKNRIN 231
           +L     +  L+Q++   +  ++M +LFQ+D  RFEKFS  + T +DG +L+DYSKN + 
Sbjct: 15  SLTSSPEWAALEQHHKSTALALHMRKLFQEDANRFEKFSTFLDT-SDGRLLVDYSKNIVT 73

Query: 232 SDVFKLL 252
            +  KLL
Sbjct: 74  EETMKLL 80



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = +3

Query: 312 KINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLE 428
           K+ F  DRAVLHIALRNR N PILV+GKD    V   L+
Sbjct: 78  KLLFRLDRAVLHIALRNRSNTPILVDGKDGPLMVTEALQ 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,894
Number of Sequences: 59808
Number of extensions: 402409
Number of successful extensions: 794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)