Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20734
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...    78   6e-15
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    46   2e-05
At4g30350.1 68417.m04313 heat shock protein-related contains sim...    32   0.31 
At1g60160.1 68414.m06777 potassium transporter family protein si...    29   2.9  
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /...    29   3.8  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    29   3.8  
At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ...    27   8.9  
At3g17250.1 68416.m02205 protein phosphatase 2C-related / PP2C-r...    27   8.9  
At2g21510.1 68415.m02560 DNAJ heat shock N-terminal domain-conta...    27   8.9  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 38/86 (44%), Positives = 58/86 (67%)
 Frame = +3

Query: 255 DLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHM 434
           +LAK+  + +    MF+G+ IN TE+R+VLH+ALR  ++  I  +G +V  +V  VL+ +
Sbjct: 68  NLAKASQLTEKISRMFNGEHINSTENRSVLHVALRAPKDAVIKADGMNVVPEVWNVLDKI 127

Query: 435 KEFSDQVVSGQWKGYTGKAITDVIKL 512
           KEFSD++ SG W G TGK + DVI +
Sbjct: 128 KEFSDKIRSGSWVGATGKPLKDVIAI 153



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
 Frame = +2

Query: 473 GVYGKSYNRRDQIGIGGSDVGPLMVTEALKPYANHLK------VHFVSNIDGTHLAEVLK 634
           G  GK       IGIGGS +GPL V  AL+     L+      + F++NID   +A  + 
Sbjct: 141 GATGKPLKDVIAIGIGGSFLGPLFVHTALQTDPEALESAKGRQLRFLANIDPVDVARNIS 200

Query: 635 KLNPETALFIIASKTFTT 688
            LNPET L ++ SKTFTT
Sbjct: 201 GLNPETTLVVVVSKTFTT 218


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 509 IGIGGSDVGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFIIASKT 679
           +GIGGS +GP  V EAL P    LK+ F+ N D   +   + +L PE A  L ++ SK+
Sbjct: 190 VGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVVISKS 248


>At4g30350.1 68417.m04313 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 924

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 276 VEQARDAMFSGQKINFTED-RAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMK--EFS 446
           ++Q    M SG  I  T++ + V+ I +R R+  P+LV   +    V  +LE ++  EFS
Sbjct: 221 LQQPGVGMQSGMMIQRTDEAKRVIEIMIRTRKRNPVLVGDSEPHILVKEILEKIENGEFS 280

Query: 447 D 449
           D
Sbjct: 281 D 281


>At1g60160.1 68414.m06777 potassium transporter family protein
           similar to potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 827

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 122 ILIFVLFTL*YCCNF*YAASCFKLIFGSIVTIYCTETL 9
           +L+ ++  L +  N  + A CF LIFGS+ TIY    L
Sbjct: 498 VLVTLVMLLIWQTNI-FLALCFPLIFGSVETIYLLAVL 534


>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
           cystatin, putative similar to cysteine proteinase
           inhibitor [Glycine max] GI:1944342; contains Pfam
           profile PF00031: Cystatin domain
          Length = 232

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 414 NAVLE--HMKEFSDQVVSGQWKGYTGKAITDVIKLVLEAQMWVLSW 545
           NAVLE   + + ++QVV+G+    T + I    K + EA++WV  W
Sbjct: 77  NAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPW 122


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/99 (23%), Positives = 42/99 (42%)
 Frame = +3

Query: 258 LAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMK 437
           L +   +E    A+   Q  N +ED+        N     +L     +  D+  +   + 
Sbjct: 238 LLEGEGIESCNFAVLE-QSENSSEDQEREEGGFSNNTTNSLLFEQSIIQDDI-ILGNAVD 295

Query: 438 EFSDQVVSGQWKGYTGKAITDVIKLVLEAQMWVLSWSQK 554
           E  +   +  WK   G+ + + IKLVL+ +  +LS +QK
Sbjct: 296 EKHESKEAEDWKEADGEKVKERIKLVLKTEEALLSLAQK 334


>At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing
           protein identical to dof6 zinc finger protein GI:5689615
           from [Arabidopsis thaliana]
          Length = 245

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 419 GTRTHEGILRSSSKRAMEGVYGKSYNRRDQIG 514
           G  +H G   S S  AM+GVYG + ++ +  G
Sbjct: 149 GVSSHLGFGSSQSPMAMDGVYGTTSHQMENTG 180


>At3g17250.1 68416.m02205 protein phosphatase 2C-related /
           PP2C-related similar to protein phosphatase-2C
           GB:AAC36698 from [Mesembryanthemum crystallinum]
          Length = 422

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 539 EDPHLSLQYQFDHVCYSFSRIPLPLPAY 456
           ED H+ +    DH+  SF R P+P+  Y
Sbjct: 132 EDEHICIDDLSDHLGSSFYRFPVPMAFY 159


>At2g21510.1 68415.m02560 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein, Saccharomyces cerevisiae; contains Pfam profile
           PF00226 DnaJ domain
          Length = 346

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 440 ILRSSSKRAMEGVYGKSYNRRDQIGIGGSDVGPLMVTEALKPYANHLKVHFVSNIDG--- 610
           +L +  KRA    YGK   ++D +    +  G L  +E  + Y   L + ++++I+    
Sbjct: 57  VLSNPDKRAAYDKYGKEGVQQDAMVDPAAVFGMLFGSEVFEEYVGQLALAYLASIEADLE 116

Query: 611 THLAEVLKKL 640
           +H  E+ K++
Sbjct: 117 SHDPEIRKQM 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,571
Number of Sequences: 28952
Number of extensions: 286044
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)