Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 158 NIRSGCDLYTNTIKPGQGYSFSVLGNDGIH 247
           N+   CD+ ++   PG G+  S     G H
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 158 NIRSGCDLYTNTIKPGQGYSFSVLGNDGIH 247
           N+   CD+ ++   PG G+  S     G H
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 445 VLH*RRIKKWFPYFCLAWR*EFPTNCDRNVLKKMLPS 335
           VL  R+IK WF    + W+ +      +NV +K  P+
Sbjct: 271 VLSERQIKIWFQNRRMKWKKDNKLPNTKNVRRKTNPA 307


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 158 NIRSGCDLYTNTIKPGQGYSFSVLGNDGIH 247
           N+   CD+ ++   PG G+  S     G H
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 445 VLH*RRIKKWFPYFCLAWR*EFPTNCDRNVLKKMLPS 335
           VL  R+IK WF    + W+ +      +NV +K  P+
Sbjct: 271 VLSERQIKIWFQNRRMKWKKDNKLPNTKNVRRKTNPA 307


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 20  VVVYAFNNKVPNGKIADVKPNDPDI 94
           VV +     V  G   D KPN+PDI
Sbjct: 729 VVTWKRATGVSPGDYKDFKPNNPDI 753


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 TFFLTHFYRSLLEILNAKLDKNKETIFLYGVNEVPNY 453
           TFF++H Y +   + +     ++  +F     E PNY
Sbjct: 222 TFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNY 258


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 TFFLTHFYRSLLEILNAKLDKNKETIFLYGVNEVPNY 453
           TFF++H Y +   + +     ++  +F     E PNY
Sbjct: 229 TFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNY 265


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 319 W*PILPQW 296
           W P+LPQW
Sbjct: 504 WMPLLPQW 511


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 304 EESVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKET 417
           +  VT+ +  M +T+ +      L   +    +KNKET
Sbjct: 311 DPKVTLELCGMISTYLIIMIQLDLARTVPKFENKNKET 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,037
Number of Sequences: 336
Number of extensions: 3533
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)