Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         30   0.36 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.1  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    28   1.1  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    28   1.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.5  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 259 SSVSVEYFSFDNTTVEE-SVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKETIFLYGV 435
           S VS++Y  F N   E  S+ +   N + + F          +L    D N+   FLY +
Sbjct: 28  SLVSIQYIPFSNRLYEIISIALNPCNFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLYSL 87

Query: 436 NEVPNYL 456
           +    YL
Sbjct: 88  HRCVYYL 94


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 5   PRSVHVVVYAFN---NKVPNGKIADVKPNDPDIIGDYKCKIIRDSTSDRTLSLLN 160
           P S+H  V + N   N++   +  D   N+P+I  D   K +  +TSD   SLLN
Sbjct: 226 PASLHSRVESTNSFINQLNRRRTKDNLTNNPEISLDEPIKALPSTTSDAPSSLLN 280


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 352 LTHFYRSLLEILNAKLDKNKETIFLYGVNEVPNYLDLTVAL 474
           +T+ YR+L +      DK +E   LYG  +VP ++ + +AL
Sbjct: 148 ITNAYRALTD------DKTRENYALYGTPDVPQHISVGIAL 182


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 516 YLKNKEFEITTLLKHEITIGYYPCS 590
           YL++ EF +T L+ H +   YYP S
Sbjct: 162 YLRSGEFPLTVLIHHVMLYQYYPKS 186


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 101  DYKCKIIRDSTSDRTLSLLNIRSGC 175
            DY   +I  ST++ T+S L   SGC
Sbjct: 1603 DYNFSVIASSTNEVTISELTSESGC 1627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,833
Number of Sequences: 5004
Number of extensions: 56702
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)