Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127...    29   3.5  

>10_08_0102 +
           14810293-14811345,14811989-14812108,14812745-14812792,
           14812886-14813006,14814073-14814129,14815109-14815217,
           14815298-14815523,14815608-14815724,14816041-14816119,
           14816303-14816325,14816698-14816742,14816872-14817030
          Length = 718

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 292 NTTVEESVTIRVMNMTATFF 351
           N T+EE VTIRV  MTA+ F
Sbjct: 668 NMTLEEEVTIRVSKMTASVF 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,526
Number of Sequences: 37544
Number of extensions: 301269
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)