Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    41   0.001
SB_31930| Best HMM Match : RVT_1 (HMM E-Value=1.3e-33)                 29   3.6  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   6.2  
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   8.3  

>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +2

Query: 20   VVVYAFNNKVPNGKIADVKPNDPDIIGDYKCKIIRDSTSDRTLSLLNIRSGCDLYTNTIK 199
            V V+ F  K   G +ADV+P+DPDI     C ++ +   +   S    R  C+L +    
Sbjct: 3458 VYVHTFEGKFLGGVVADVRPDDPDIDDPMTCALL-NPPQNNIFSF--PRGNCELSSLAYS 3514

Query: 200  PGQGYSFSVLGNDGIHKDAY 259
                +  SV G+DG+    Y
Sbjct: 3515 QDARFDLSVNGSDGLGAVTY 3534


>SB_31930| Best HMM Match : RVT_1 (HMM E-Value=1.3e-33)
          Length = 405

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 329 ITLMVTDSSTVVLSKEKYSTLTEDMRLCEYRHYPALKKNNLD 204
           + L++T +  + L   +  +LT   +LC    YPALKK +LD
Sbjct: 109 LDLVITRAEEIPLDNVRVLSLTATKKLC----YPALKKESLD 146


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -3

Query: 663 TIYNFVS-SKILMEF-VHKPPFDIDVTSMDNI 574
           T+YN VS     + F VHKP F I++TS+D I
Sbjct: 361 TVYNNVSVDNCSVPFQVHKPVFPINITSLDCI 392


>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 498 ERIKEHY--LKNKEF-EITTLLKHEITIGYYPCSSHRCQT 608
           E++KE+   LK KEF ++   L+H  TI    CS+H   T
Sbjct: 564 EKMKEYMKALKTKEFSKLEFCLRHPYTIALLDCSTHPAGT 603


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 LLEILNAKLDKNKETIFLYGVNEVPNY 453
           LLE++ +KL+KN E   L     +P Y
Sbjct: 303 LLEMVKSKLEKNNEKFRLISTRRIPRY 329


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 660  IYNFVSSKILMEFVHKPPFDIDVTSMDN 577
            + NFV  K+  +F+  PPFD+  + +D+
Sbjct: 1526 VTNFVEDKLGKKFIQPPPFDLAKSYVDS 1553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,367
Number of Sequences: 59808
Number of extensions: 388748
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)