Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY356402-1|AAR13653.1| 3222|Homo sapiens fat-like cadherin FATJ ...    52   2e-06

>AY356402-1|AAR13653.1| 3222|Homo sapiens fat-like cadherin FATJ
            protein protein.
          Length = 3222

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +2

Query: 8    RSVHVVVYAFNNKVPNGKIADVKPNDPDIIGDYKCKIIRDSTSDRTLSLLNIRSG-CDLY 184
            R+V + V  + N  P G +  VKP DPD++  + C +    TS  T SL +I  G CDL 
Sbjct: 1913 RTVEIFVNYYGNLFPGGILGSVKPQDPDVLDSFHCSL----TSGVT-SLFSIPGGTCDLN 1967

Query: 185  TNTIKPGQGYSFSVLGNDGIH 247
            +        +  +VL NDG+H
Sbjct: 1968 SQPRSTDGTFDLTVLSNDGVH 1988



 Score = 36.7 bits (81), Expect = 0.079
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 259  SSVSVEYFSFDNTTVEESVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKETIFLYGVN 438
            S++ V +  F N TV+ S+ +R+   T   FLT+ Y   L I +++L      + LY   
Sbjct: 1993 SNIRVFFAGFSNATVDNSILLRLGVPTVKDFLTNHYLHFLRIASSQLTGLGTAVQLYSAY 2052

Query: 439  EVPNYLDLTVAL 474
            E  N   L  A+
Sbjct: 2053 EENNRTFLLAAV 2064


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,677,269
Number of Sequences: 237096
Number of extensions: 1802032
Number of successful extensions: 5869
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5868
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)