Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    35   0.048
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    35   0.048
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    35   0.048
AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z72505-4|CAA96611.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256  ISSVSVEYFSFDNTTVEESVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKE-TIFLYG 432
            +S V V   S DN  ++ +V+IR+ +M+   F+    +    I++  L+ N + +I L  
Sbjct: 3502 VSYVEVHVTSIDNDVIDHAVSIRIRSMSVDEFMRKHVKEFRRIISHHLNLNDDSSIQLIS 3561

Query: 433  VNEVPN 450
            V  VP+
Sbjct: 3562 VQAVPS 3567


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256  ISSVSVEYFSFDNTTVEESVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKE-TIFLYG 432
            +S V V   S DN  ++ +V+IR+ +M+   F+    +    I++  L+ N + +I L  
Sbjct: 3502 VSYVEVHVTSIDNDVIDHAVSIRIRSMSVDEFMRKHVKEFRRIISHHLNLNDDSSIQLIS 3561

Query: 433  VNEVPN 450
            V  VP+
Sbjct: 3562 VQAVPS 3567


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256  ISSVSVEYFSFDNTTVEESVTIRVMNMTATFFLTHFYRSLLEILNAKLDKNKE-TIFLYG 432
            +S V V   S DN  ++ +V+IR+ +M+   F+    +    I++  L+ N + +I L  
Sbjct: 3502 VSYVEVHVTSIDNDVIDHAVSIRIRSMSVDEFMRKHVKEFRRIISHHLNLNDDSSIQLIS 3561

Query: 433  VNEVPN 450
            V  VP+
Sbjct: 3562 VQAVPS 3567


>AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical
           protein C14C6.3 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 322 RVMNMTATFFL-THFYRSLLE 381
           RV+N TATFF+   FYR +LE
Sbjct: 72  RVLNRTATFFIEDDFYREMLE 92


>AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical
           protein Y17G9A.4 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 349 FLTHFYRSLLEILNAKLDKNKETIFLYGVNEVPNYLDLTVAL 474
           + +H++RS  E     ++   + I   G+N+ P+Y D+ V L
Sbjct: 138 YRSHYWRSTTENAKDNIENEVKIICAEGLNKQPDYNDVPVKL 179


>Z72505-4|CAA96611.1|  347|Caenorhabditis elegans Hypothetical
           protein C50C10.6 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 86  PDIIGDYKCKIIRDSTSDRTLSLLNIRSGCDLYT 187
           PD +G YK  ++  S  + T S +N+ +GC + T
Sbjct: 37  PDALGLYKWLMMYTSIFELTYSFVNLFAGCSVRT 70


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 207 KVILFQCWVMTVFTKTHILSKCRILF 284
           K++L QC+V+++    HIL+ C I++
Sbjct: 116 KILLIQCFVVSLRVFLHILTICIIIY 141


>AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical
           protein T10B11.4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 288 KRKVFDTY*GYASL*IPSLPSTEK 217
           KRK+FD Y  Y+SL   ++ S+EK
Sbjct: 299 KRKIFDDYVPYSSLYFAAIKSSEK 322


>AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical
           protein C17H12.8 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 SSVSVEYFSFDNTTVEESVTIRVMNMTATF-FLTHFYRSL 375
           S+  V ++ F NTT +  V  + +NM ++F  + HF R L
Sbjct: 93  SAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERML 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,193
Number of Sequences: 27780
Number of extensions: 306623
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)