Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20732
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff...    29   2.2  
At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    29   2.9  
At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to e...    28   6.8  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    28   6.8  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    28   6.8  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    27   8.9  
At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /...    27   8.9  

>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1050

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 38  NNKVPNGKIADVKPNDPDIIGDYKCKIIR-----DSTSDRTLSLLNIRSGCDLYTNTIK 199
           NN+V  G     K N   ++ DY  +++R      S  D  L  L  +S C+ ++N IK
Sbjct: 235 NNEVDGGSCVSCKENSESVVSDYSARMLRSFKLNSSQEDAILRCLEAKS-CN-HSNNIK 291


>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 185 TNTIKPGQGYSFSVLGNDGIHKD 253
           T+T+  GQG SF V   DGI KD
Sbjct: 220 TSTVLTGQGLSFRVTTTDGITKD 242


>At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 261

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 185 TNTIKPGQGYSFSVLGNDGIHKD 253
           T T+  GQG SF V  +DGI KD
Sbjct: 218 TITVLTGQGLSFRVTTSDGITKD 240


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
           protein low similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 298 TVEESVTIRVMNMTATFFL--THFYRSLLEILNAKLDKNKETIFLYGVNEV 444
           TVE    I  +N     F    H Y+S LEILN    +NKE   +Y  NEV
Sbjct: 137 TVEFEQAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIKEVY--NEV 185


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +2

Query: 86  PDIIGDYKCKIIRDSTSDRTLSLLNIRSGCDLYTN-TIKPGQGYSFSVLGNDGIHKDAYP 262
           P  + D+ C    DS    + +  N+  G  LYT+ TI+    +   +L   G+  D Y 
Sbjct: 59  PVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTDETIQ----FMTRILNRSGLGDDTYS 114

Query: 263 Q*VSNTFLLTTPLWKNRSPSEL 328
                T   T  +++ R  SEL
Sbjct: 115 PRCMLTSPPTPSMYEARHESEL 136


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 86  PDIIGDYKCKIIRDSTSDRTLSLLNIRSGCDLYT-NTIKPGQGYSFSVLGNDGIHKDAYP 262
           P  + D+ C    DS    + +  N+  G  LYT  TI+    +   +L   G+  D Y 
Sbjct: 59  PVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQ----FMTRILNRSGLGDDTYS 114

Query: 263 Q*VSNTFLLTTPLWKNRSPSEL 328
                T   T  +++ R  SEL
Sbjct: 115 PRCMLTSPPTPSMYEARHESEL 136


>At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 128 STSDRTLSLLNIRSGCDLYTNTIKPGQGYSFSVLGNDGIHKDAYPQ*VSNTFLLTT 295
           ST D  +++L+  +  D+Y     PG G S   LG +   K+     V N+    T
Sbjct: 221 STGDDCIAMLSGNTNFDIYNVKCGPGHGISIGSLGKNKDEKNVNGLMVRNSVFTGT 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,730
Number of Sequences: 28952
Number of extensions: 271290
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)