Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20731
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.5  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    27   3.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   6.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   6.1  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   8.1  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 263  LLQMFANFPSPPHFYCTKEIFTSAVLKIYLFIFHVFAHLSENLTYRLR 120
            LL +  +FP  P    +K       L++YL ++ +  +  E  TY ++
Sbjct: 1296 LLSLAIDFPGDPFVMVSKMEKYEHALRVYLLVWDLIFYHFEETTYNIK 1343


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 316 NFSVSIENSFK*VYKTRYYCKCSQISRVLL 227
           N  + IE+  K +Y++ Y C  S ISR LL
Sbjct: 101 NIELIIEDLSKGLYESAYVCFSSTISRALL 130


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 439 SNKFFDCRGRTRVVTRPVCDSFTYRNRSSNHILISIPGA 555
           S+  F+   R    TRP+  +     RSSNH+  S+P A
Sbjct: 204 SSVSFNRLSRNHSPTRPLLGNRDLFRRSSNHVSASMPTA 242


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 324 VFLILAYRSRIASSRFIKHDIIANVRKFPESSSLLL 217
           +F I+ Y     S     HD+ A +R +PE  SL++
Sbjct: 373 LFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSLII 408


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 270 HDIIANVRKFPESSSLLLHKRNFHVSCFK 184
           HD+ + +  + E   LLLH+++F+  C++
Sbjct: 55  HDLASFLEVYYEGVELLLHEQDFYDLCYQ 83


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 181 IFKTADVKISFVQ*K*GGLGKFANICNNIVFYKPT*SYSRSI 306
           IF   +V I  +  K     KF N+C+NI+ ++   +YS ++
Sbjct: 378 IFAAINVYIIELGGKFSNRAKFNNLCSNILHFRALSAYSLNL 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,045
Number of Sequences: 5004
Number of extensions: 54580
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)