Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20731
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918...    28   8.5  

>04_04_0172 +
           23290421-23290519,23291564-23291677,23291783-23291878,
           23291955-23292039,23292262-23292317,23292432-23292510,
           23292599-23292733,23292842-23293077,23293173-23293505
          Length = 410

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 303 RSRIASSRFIKHDIIANVRKFPESSSLLLHKRNFHV 196
           R+ IA S+F    I A+ +++P    L+LH+ N  V
Sbjct: 52  RTAIAISKFESVTICASAKQYPYVHELMLHQPNIRV 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,090
Number of Sequences: 37544
Number of extensions: 320867
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)