Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20731
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      31   0.93 
SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)                       29   2.8  
SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.9  
SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)                  28   6.5  

>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 486  PCLRLVYVSEPLIKSHSYLYPGGSADVLSVDSLFSVDQVSVMLTIWARIGRVRS 647
            PCL      EP+ K H+++  G  A    ++SL ++D+ +  L  + R+  ++S
Sbjct: 1056 PCLEW----EPIRKHHAHIVMGAQAAAYKINSLLALDKTASKLCHFTRLKNIKS 1105


>SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)
          Length = 1108

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 216 HKRNFHVSCFKDIPVHISCFRA---PIGKFDLQTT*RCYVVIRYKLFCPQRMTV 64
           H    H+ C +  P+H+ C +    P+ K  L    R Y  +   + C QRMT+
Sbjct: 272 HALALHILCNQ--PLHVQCKQRNTIPVRKLMLDGITRVYHALTLHILCKQRMTI 323



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 210 RNFHVSCFKDIPVHISCFRA---PIGKFDLQTT*RCYVVIRYKLFCPQRMTV 64
           R +H      + +HI C +    P+ K  L    R Y  +   + C QRMT+
Sbjct: 148 RVYHALALHTLSLHIQCKQRKTIPVRKLMLDGITRVYHALTLHILCKQRMTI 199


>SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 456 LPWPHARCHSPCLRLVYVSEPLIKSHSYLYP 548
           + +P   CHS C  +    EP++K H+Y +P
Sbjct: 98  ISYPVPPCHSLCTSVRDSCEPVMKIHNYSWP 128


>SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)
          Length = 393

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 613 SITLTWSTLNSESTDSTSAEPP 548
           S+T  W+T N  ST++TSA  P
Sbjct: 312 SVTAAWTTPNRSSTNTTSASSP 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,727
Number of Sequences: 59808
Number of extensions: 399893
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)