Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20730
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 164 4e-41
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 164 4e-41
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 163 7e-41
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 162 2e-40
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 1e-35
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 129 1e-30
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 88 3e-18
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 88 3e-18
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 4e-18
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 87 5e-18
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 5e-18
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 85 2e-17
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 81 3e-16
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 80 1e-15
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 76 2e-14
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 66 1e-11
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 55 3e-08
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 53 1e-07
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 47 7e-06
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 44 9e-05
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 31 0.49
SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8) 29 1.5
SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2) 29 1.5
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4) 28 3.4
SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_47904| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_59740| Best HMM Match : Tubulin (HMM E-Value=2.1e-25) 27 7.9
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 164 bits (398), Expect = 4e-41
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEPGTM+SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESC
Sbjct: 68 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 127
Query: 433 DCLQGFQLTHSLGGG 477
DCLQGFQLTHSLGGG
Sbjct: 128 DCLQGFQLTHSLGGG 142
Score = 145 bits (352), Expect = 1e-35
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 232
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 233 PRAILVDWSP 262
PRAILVD P
Sbjct: 61 PRAILVDLEP 70
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 164 bits (398), Expect = 4e-41
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEPGTM+SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESC
Sbjct: 281 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 340
Query: 433 DCLQGFQLTHSLGGG 477
DCLQGFQLTHSLGGG
Sbjct: 341 DCLQGFQLTHSLGGG 355
Score = 150 bits (363), Expect = 7e-37
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = +2
Query: 44 LYKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 223
L+KMREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GG
Sbjct: 211 LFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG 270
Query: 224 KYVPRAILVDWSP 262
KYVPRA+LVD P
Sbjct: 271 KYVPRAVLVDLEP 283
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 163 bits (396), Expect = 7e-41
Identities = 72/75 (96%), Positives = 75/75 (100%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEPGTM+SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESC
Sbjct: 13 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 72
Query: 433 DCLQGFQLTHSLGGG 477
DC+QGFQLTHSLGGG
Sbjct: 73 DCIQGFQLTHSLGGG 87
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 221 GKYVPRAILVDWSP 262
GKYVPRA+LVD P
Sbjct: 2 GKYVPRAVLVDLEP 15
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 162 bits (393), Expect = 2e-40
Identities = 71/75 (94%), Positives = 75/75 (100%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEPGTM+SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+ESC
Sbjct: 68 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELMDSVLDVVRKEAESC 127
Query: 433 DCLQGFQLTHSLGGG 477
DC+QGFQLTHSLGGG
Sbjct: 128 DCIQGFQLTHSLGGG 142
Score = 142 bits (343), Expect = 2e-34
Identities = 61/70 (87%), Positives = 66/70 (94%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 232
MREIV LQAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 233 PRAILVDWSP 262
PR++L+D P
Sbjct: 61 PRSVLIDLEP 70
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 145 bits (352), Expect = 1e-35
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 232
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 233 PRAILVDWSP 262
PRAILVD P
Sbjct: 61 PRAILVDLEP 70
Score = 56.8 bits (131), Expect = 9e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVF 327
LEPGTM+SVRSGPFGQIFRPDNFVF
Sbjct: 68 LEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 129 bits (311), Expect = 1e-30
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEPGTM++VR GP G +FRPDNFV QSGA NNWAKGHY+EGAEL+D++ DV+RKE+E+C
Sbjct: 24 LEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYSEGAELIDNIFDVLRKEAENC 83
Query: 433 DCLQGFQLTHSLGGG 477
DC+QG QL +LGGG
Sbjct: 84 DCMQGVQLIQALGGG 98
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 215 SGGKYVPRAILVDWSP 262
+GG+YVPR+ILVD P
Sbjct: 11 TGGRYVPRSILVDLEP 26
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 88.2 bits (209), Expect = 3e-18
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ V G+ A NN+A+GHYT G E+VD VLD +RK ++ C
Sbjct: 70 LEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTVGKEIVDLVLDRIRKLADQC 129
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 130 TGLQGFLIFHSFGGG 144
Score = 87.8 bits (208), Expect = 4e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD +RK ++ C
Sbjct: 503 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLVLDRIRKLADQC 562
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 563 TGLQGFLIFHSFGGG 577
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 47 YKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASG 220
Y+ RE + + GQ G QIG WE+ EHGI P G D + + N +++E
Sbjct: 432 YEERECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 491
Query: 221 GKYVPRAILVDWSP 262
GK+VPRA+ VD P
Sbjct: 492 GKHVPRAVFVDLEP 505
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 226
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 227 YVPRAILVDWSP 262
+VPRA+ VD P
Sbjct: 61 HVPRAVFVDLEP 72
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK ++ C
Sbjct: 655 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQC 714
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 715 TGLQGFLIFHSFGGG 729
Score = 87.4 bits (207), Expect = 5e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD +RK ++ C
Sbjct: 134 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 193
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 194 TGLQGFLIFHSFGGG 208
Score = 60.1 bits (139), Expect = 9e-10
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 226
+RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 645
Query: 227 YVPRAILVDWSP 262
+VPRA+ VD P
Sbjct: 646 HVPRAVFVDLEP 657
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 44 LYKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEAS 217
L RE + + GQ G QIG WE+ EHGI P G D + + N +++E
Sbjct: 62 LILQRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 121
Query: 218 GGKYVPRAILVDWSP 262
GK+VPRA+ VD P
Sbjct: 122 AGKHVPRAVFVDLEP 136
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 56 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 229
RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 573
Query: 230 VPRAILVDWSP 262
VPRA+ VD P
Sbjct: 574 VPRAVFVDLEP 584
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 87.8 bits (208), Expect = 4e-18
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D+VLD +RK ++ C
Sbjct: 70 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDTVLDRLRKLADGC 129
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 130 TGLQGFLIFHSFGGG 144
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 226
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60
Query: 227 YVPRAILVDWSP 262
+VPRA+ D P
Sbjct: 61 HVPRAVFCDLEP 72
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 87.4 bits (207), Expect = 5e-18
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK ++ C
Sbjct: 69 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQC 128
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 129 TGLQGFLIFHSFGGG 143
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 56 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 229
RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
Query: 230 VPRAILVDWSP 262
VPRA+ VD P
Sbjct: 61 VPRAVFVDLEP 71
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 87.4 bits (207), Expect = 5e-18
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK ++ C
Sbjct: 874 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDLVLDRIRKLADQC 933
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 934 TGLQGFLIFHSFGGG 948
Score = 85.0 bits (201), Expect = 3e-17
Identities = 36/75 (48%), Positives = 51/75 (68%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E +D VLD +RK ++ C
Sbjct: 441 LEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEQIDIVLDRLRKLADGC 500
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 501 TGLQGFLIFHSFGGG 515
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 47 YKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASG 220
Y+ RE + + GQ G Q+G WE+ EHGI P G D + + N +++E
Sbjct: 803 YEERECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 862
Query: 221 GKYVPRAILVDWSP 262
GK+VPRA+ D P
Sbjct: 863 GKHVPRAVFADLEP 876
Score = 58.4 bits (135), Expect = 3e-09
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 56 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGKY 229
RE + + GQ G QIG WE+ EHGI P G D + + N ++ E GK+
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKH 432
Query: 230 VPRAILVDWSP 262
VPRA+ VD P
Sbjct: 433 VPRAVFVDLEP 443
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ +R+G + Q+F P+ + G+ A NN+A+GHYT G + +D+VLD +RK ++ C
Sbjct: 488 LEPSVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKDHIDNVLDRIRKLADQC 547
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 548 SGLQGFLVFHSFGGG 562
Score = 84.6 bits (200), Expect = 4e-17
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G +L++ VLD +RK ++ C
Sbjct: 55 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKQLIEIVLDRLRKLADQC 114
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 115 TGLQGFLIFHSFGGG 129
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 47 YKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASG 220
Y+ RE V + GQ G Q+G WE+ EHGI P G D + + N +++E
Sbjct: 417 YEERECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 476
Query: 221 GKYVPRAILVDWSPA 265
GK+VPRA+ VD P+
Sbjct: 477 GKHVPRAVFVDLEPS 491
Score = 43.6 bits (98), Expect = 9e-05
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 98 IGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDWSP 262
+G WE+ EHGI P G D + + N +++E GK+VPRA+ D P
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFCDLEP 57
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 85.4 bits (202), Expect = 2e-17
Identities = 36/75 (48%), Positives = 51/75 (68%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD RK ++ C
Sbjct: 70 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRCRKLADQC 129
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 130 TGLQGFLIFHSFGGG 144
Score = 60.5 bits (140), Expect = 7e-10
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 226
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 227 YVPRAILVDWSP 262
+VPRA+ VD P
Sbjct: 61 HVPRAVFVDLEP 72
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 82.6 bits (195), Expect = 2e-16
Identities = 34/75 (45%), Positives = 50/75 (66%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ +R+G + Q+F P+ + G+ A NN+A+GHYT G E +D LD +RK ++ C
Sbjct: 35 LEPTVIDEIRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQC 94
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 95 TGLQGFLIFHSFGGG 109
Score = 31.1 bits (67), Expect = 0.49
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 185 ERINVYYNEASGGKYVPRAILVDWSP 262
+ N ++ E GK+VPRA+ VD P
Sbjct: 12 DSFNTFFAETGAGKHVPRAVFVDLEP 37
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 82.2 bits (194), Expect = 2e-16
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +1
Query: 271 ESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 450
+ VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK ++ C LQGF
Sbjct: 13 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 72
Query: 451 QLTHSLGGG 477
+ HS GGG
Sbjct: 73 LIFHSFGGG 81
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 82.2 bits (194), Expect = 2e-16
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 432
LEP ++ VR+G + ++ P+ + G+ A NN+A+GHYT G E+V+ V+D +RK ++ C
Sbjct: 981 LEPTVIDEVRTGMYRYLYHPEQMISGKEDAANNYARGHYTIGKEMVEVVMDKIRKMTDQC 1040
Query: 433 DCLQGFQLTHSLGGG 477
LQGF + HS GGG
Sbjct: 1041 SGLQGFLIFHSFGGG 1055
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 206 NEASGGKYVPRAILVDWSP 262
+EA+ GKYVPRA+LVD P
Sbjct: 965 SEAAAGKYVPRAVLVDLEP 983
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 81.4 bits (192), Expect = 3e-16
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +1
Query: 277 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQL 456
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK ++ C LQGF +
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLI 62
Query: 457 THSLGGG 477
HS GGG
Sbjct: 63 FHSFGGG 69
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 79.8 bits (188), Expect = 1e-15
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +1
Query: 331 QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGG 477
Q+ A NNWAKG YTEGAEL+DS +D +RK +E+CD +QGFQ+ HSLGGG
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQGFQIAHSLGGG 50
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 75.8 bits (178), Expect = 2e-14
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +1
Query: 277 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQL 456
+R+G + Q+F P+ + G+ A NN+A+GHYT G E +D LD +RK ++ C LQGF +
Sbjct: 3 IRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGFLI 62
Query: 457 THSLGGG 477
HS GGG
Sbjct: 63 FHSFGGG 69
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 66.1 bits (154), Expect = 1e-11
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +1
Query: 310 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGG 477
P+ + G+ A NN+A+GHYT G + VD VLD +RK ++ C LQGF + HS GGG
Sbjct: 79 PEQLITGKEDAANNYARGHYTIGKQQVDQVLDRLRKLADQCSGLQGFFIFHSFGGG 134
Score = 61.3 bits (142), Expect = 4e-10
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 226
MRE + + GQ G QIG WE+ EHGI P G D + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGK 60
Query: 227 YVPRAILVDWSPAPWNLSAPDL 292
+VPRA+ VD P LS L
Sbjct: 61 HVPRAVFVDLEPTVVALSPEQL 82
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGGK 226
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGK 60
Query: 227 YVPRAILVDWSPA 265
+VPRA+ VD P+
Sbjct: 61 HVPRAVFVDLEPS 73
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +1
Query: 277 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 417
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 54.8 bits (126), Expect = 3e-08
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 310 PDNFVFGQS-GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGG 477
P F Q G+GNNWA G G + +D VLD+V++E E CD L GF SL GG
Sbjct: 94 PKGQQFSQKRGSGNNWAHGFSEHGPKSIDKVLDLVQREVEKCDRLDGFLTLLSLAGG 150
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 62 IVHLQAGQCGNQIGAKFWEIISDE 133
IV LQ GQCGNQIG + +++I ++
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVED 26
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 277 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 417
VR G + +F PD + G+ A NN+A+GHYT G E +D L+ +RK
Sbjct: 3 VRMGTYRDLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRK 49
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 47.2 bits (107), Expect = 7e-06
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 307 RPDNFVFGQSGAGNNWAKGHYTE-----GAELVDSVLDVVRKESESCDCLQGFQLTHSLG 471
R N + G+ G GNN+A G++ G L+ +D +RKE E CD G + HSL
Sbjct: 65 RDSNIIAGRRGRGNNFALGYHGNSIDEGGTSLLHMTMDAMRKEVERCDSFAGTIVMHSLT 124
Query: 472 GG 477
GG
Sbjct: 125 GG 126
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +2
Query: 41 NLYKMREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER----INVYYN 208
++ MRE + + GQ G QIG WE+ EHGI P G H SD +R + +++
Sbjct: 192 SIQTMRECLSIHVGQAGVQIGNACWELYCLEHGIQPDG--HMPSDQSADRCDDSFSTFFS 249
Query: 209 EASGGKY 229
E + GK+
Sbjct: 250 ETASGKH 256
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 415 KESESCDCLQGFQLTHSLGGG 477
K ++ C LQGF + HS GGG
Sbjct: 255 KHADQCTGLQGFLVFHSFGGG 275
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 110 FWEIISDEHGIDPTGAYHG-DSDLQLERINVYYNE 211
FWE+I++EHGIDP G S +Q +R+NVY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 43.6 bits (98), Expect = 9e-05
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +1
Query: 409 VRKESESCDCLQGFQLTHSLGGG 477
+RKE+E CD +QGFQL HSLGGG
Sbjct: 1 MRKEAEDCDAIQGFQLLHSLGGG 23
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 31.1 bits (67), Expect = 0.49
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 253 LEPGTMESVRSGPFGQIFRPDNFVFGQSGAGNNW 354
+E G + ++ GP +F + SG GNNW
Sbjct: 82 MEEGVVNNILKGPLHDVFDCQQLITDVSGCGNNW 115
>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
Length = 582
Score = 29.5 bits (63), Expect = 1.5
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDE---HGIDPTGAYHGDSDLQLERINVYYNEASGG 223
+RE++ LQ G N +G +W I G P + D L E + V E
Sbjct: 27 VREVITLQFGHYANFVGTHWWNIQESSFCYDGASPKSEINHDC-LFREGLTVTGQET--- 82
Query: 224 KYVPRAILVDWSPAPWNLSAPDL 292
Y PR +L D + NLS L
Sbjct: 83 -YTPRLLLYDLKGSLRNLSTEGL 104
>SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2)
Length = 210
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP K+ +CP
Sbjct: 18 CPLKEMLDTPLCPLKKMLNTPLCP 41
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L AP CP ++ +CP
Sbjct: 172 CPLKEMLDAPLCPLKEMLDTPLCP 195
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 62 CPLKEMLDTPLCPLKEMLNTPLCP 85
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 51 CPLKEMLDTPLCPLKEMLDTPLCP 74
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 73 CPLKEMLNTPLCPLKEMLNTPLCP 96
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 128 CPLKEMLNTPLCPLKEMLNTPLCP 151
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 139 CPLKEMLNTPLCPLKEMLNTPLCP 162
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 150 CPLKEMLNTPLCPLKEMLNTPLCP 173
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 7 CPLKEMLNTPLCPLKEMLDTPLCP 30
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 29 CPLKKMLNTPLCPLKEMLNTPLCP 52
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 40 CPLKEMLNTPLCPLKEMLDTPLCP 63
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 365 CPLAQLLPAPDCPKTKLSGRKICP 294
CPL ++L P CP ++ +CP
Sbjct: 161 CPLKEMLNTPLCPLKEMLDAPLCP 184
>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
Length = 582
Score = 28.3 bits (60), Expect = 3.4
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 53 MREIVHLQAGQCGNQIGAKFWEIISDEHGID---PTGAYHGDSDLQLERINVYYNEASGG 223
+RE++ LQ G N +G +W I D P + D L E + V E
Sbjct: 27 VREVITLQFGHYANFVGTHWWNIQESSFCYDAASPKSEINHDC-LFREGLTVTGQET--- 82
Query: 224 KYVPRAILVDWSPAPWNLSAPDL 292
Y PR +L D + NLS L
Sbjct: 83 -YTPRLLLYDLKGSLRNLSTEGL 104
>SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 208 IVVYIDALQLQVRVPM-VGTGGVDAVLVGDDLPELSSN 98
I VY DA++LQV P+ G+D + V D EL +
Sbjct: 48 ITVYADAVELQVTYPLRAPLRGIDLITVYADAVELQGS 85
>SB_47904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 355 AKGHYTEGAELVDSVLDVVRKESESCDCLQ-GFQLTH 462
A+G E L +V ++ KE E C CL+ G +L H
Sbjct: 74 AQGFDEEALALDSTVKELQHKEKEMCQCLECGKELQH 110
>SB_59740| Best HMM Match : Tubulin (HMM E-Value=2.1e-25)
Length = 139
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 421 SESCDCLQGFQLTHSLGGG 477
++ C LQGF + HS GGG
Sbjct: 1 ADQCTGLQGFLIFHSFGGG 19
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,529
Number of Sequences: 59808
Number of extensions: 281680
Number of successful extensions: 800
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -