Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20729
(528 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|R... 147 1e-34
UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67; Eukaryo... 140 1e-32
UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107; Fungi/... 139 3e-32
UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57; Eukaryo... 129 3e-29
UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4... 107 2e-22
UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, wh... 106 4e-22
UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative; ... 105 8e-22
UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951, ... 100 2e-20
UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-gr... 93 3e-18
UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas ... 78 1e-13
UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;... 73 5e-12
UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus... 62 8e-09
UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1; Encephal... 60 2e-08
UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillard... 59 7e-08
UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;... 55 9e-07
UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31; Archa... 42 0.009
UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1; Methan... 40 0.035
UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8; Euryar... 37 0.25
UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2; Methan... 37 0.33
UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12; Archa... 36 0.76
UniRef50_Q9K4U6 Cluster: 15,16-dihydrobiliverdin:ferredoxin oxid... 36 0.76
UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2; environm... 35 1.0
UniRef50_Q0PH56 Cluster: TraG-like protein; n=5; Neisseria gonor... 34 1.8
UniRef50_Q4P153 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella... 32 9.4
>UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|Rep:
Ribosomal protein L5e - Hister sp. APV-2005
Length = 268
Score = 147 bits (357), Expect = 1e-34
Identities = 68/81 (83%), Positives = 73/81 (90%), Gaps = 1/81 (1%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
MGFVKVVKNKQYFKR+QVKFK RREGKTDYYARKRL+VQDKNKYNTPKYRLIVR SN+D+
Sbjct: 1 MGFVKVVKNKQYFKRFQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNRDI 60
Query: 221 TCQVAYSRIXG-AILCALLIH 280
TCQ+AYSRI G ILCA H
Sbjct: 61 TCQIAYSRIEGDKILCAAYSH 81
Score = 58.8 bits (136), Expect(2) = 3e-13
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +1
Query: 424 EYNVEPVDNGPGAFRCYLDVGLARTTTG 507
EYNVE V+NGPGAFRCYLDVGL RTTTG
Sbjct: 98 EYNVESVENGPGAFRCYLDVGLNRTTTG 125
Score = 37.9 bits (84), Expect(2) = 3e-13
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVK 306
I+CAAYSHELPRYGVK
Sbjct: 74 ILCAAYSHELPRYGVK 89
>UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67;
Eukaryota|Rep: 60S ribosomal protein L5 - Drosophila
melanogaster (Fruit fly)
Length = 299
Score = 140 bits (340), Expect = 1e-32
Identities = 65/81 (80%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
MGFVKVVKNKQYFKRYQVKF+ RREGKTDYYARKRL QDKNKYNTPKYRLIVRLSNKD+
Sbjct: 1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60
Query: 221 TCQVAYSRIXG-AILCALLIH 280
T Q+AY+RI G ++CA H
Sbjct: 61 TVQIAYARIEGDRVVCAAYSH 81
Score = 106 bits (254), Expect = 4e-22
Identities = 49/83 (59%), Positives = 56/83 (67%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
+VCAAYSHELP+YG++VGLTNYAAAY TG E+NVE
Sbjct: 74 VVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVE 133
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
PVD+GPGAFRC+LDVGLARTTTG
Sbjct: 134 PVDDGPGAFRCFLDVGLARTTTG 156
>UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107;
Fungi/Metazoa group|Rep: 60S ribosomal protein L5 - Homo
sapiens (Human)
Length = 297
Score = 139 bits (337), Expect = 3e-32
Identities = 62/81 (76%), Positives = 72/81 (88%), Gaps = 1/81 (1%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
MGFVKVVKNK YFKRYQVKF+ RREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 221 TCQVAYSRIXG-AILCALLIH 280
CQ+AY+RI G I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 4e-20
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57;
Eukaryota|Rep: 60S ribosomal protein L5 - Caenorhabditis
elegans
Length = 293
Score = 129 bits (312), Expect = 3e-29
Identities = 58/76 (76%), Positives = 66/76 (86%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
MG VKV+KNK YFKRYQVK + RREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 221 TCQVAYSRIXGAILCA 268
Q+AYS+I G ++ A
Sbjct: 61 VAQLAYSKIEGDVVVA 76
Score = 75.8 bits (178), Expect = 6e-13
Identities = 39/83 (46%), Positives = 47/83 (56%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
+V +AYSHELPRYG+KVGLTNYAAAY+TG +YNVE
Sbjct: 74 VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
+ F+ LD+GLARTTTG
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155
>UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4;
Leishmania|Rep: 60S ribosomal protein L5, putative -
Leishmania major strain Friedlin
Length = 328
Score = 107 bits (256), Expect = 2e-22
Identities = 44/71 (61%), Positives = 61/71 (85%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
M FVKVVKNK YFKR+QVK++ RREGKTDY+AR+++V+QDK K+ +PKYRL+VR++NKD+
Sbjct: 24 MPFVKVVKNKAYFKRFQVKYRRRREGKTDYHARRQMVLQDKTKFGSPKYRLVVRITNKDI 83
Query: 221 TCQVAYSRIXG 253
Q+ ++I G
Sbjct: 84 IAQIVQAKIVG 94
Score = 54.8 bits (126), Expect = 1e-06
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
+V AAY+HELP +G++ GLTNYAAAY+TG V
Sbjct: 97 VVMAAYAHELPAFGIEHGLTNYAAAYATGLLLARRTLAKLGIADKFQGAKEADGSYSAVR 156
Query: 439 PVDNGPG------AFRCYLDVGLARTTTG 507
+ G F+ LDVGLARTTTG
Sbjct: 157 TKKDDEGDDEERFPFKAILDVGLARTTTG 185
>UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 338
Score = 106 bits (254), Expect = 4e-22
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
M FVK+VK YFKR+Q KF+ RREGKTDYYAR RL+VQDK+KYN+PKYR +VR +N +
Sbjct: 1 MAFVKLVKGTPYFKRFQTKFRRRREGKTDYYARSRLIVQDKDKYNSPKYRFVVRHTNTKI 60
Query: 221 TCQVAYSRIXG 253
CQV Y+ + G
Sbjct: 61 ICQVIYATLKG 71
Score = 41.9 bits (94), Expect = 0.009
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTG 345
+V AA S EL R+G+ GLTNYAAAY+TG
Sbjct: 74 VVAAAESTELKRFGLTSGLTNYAAAYATG 102
>UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative;
n=4; Plasmodium (Vinckeia)|Rep: Ribosomal protein family
L5, putative - Plasmodium berghei
Length = 314
Score = 105 bits (251), Expect = 8e-22
Identities = 47/71 (66%), Positives = 55/71 (77%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
M +VKVVKNK YFKRYQVK++ RREGKTDY ARK L++QDKNKYN K R IVR +N +
Sbjct: 1 MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFIVRKTNNQI 60
Query: 221 TCQVAYSRIXG 253
CQ+A S I G
Sbjct: 61 ICQIASSHIEG 71
Score = 42.7 bits (96), Expect = 0.005
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTG---XXXXXXXXXXXXXXXXXXXXXXXXXXEY 429
I+ A S EL RYG+ VGL NYAAAY+TG E
Sbjct: 74 ILSEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDNQFIGVEKVTSESVAED 133
Query: 430 NVEPVDNGPGAFRCYLDVGLARTTTG 507
+ + + +LDVG+ RTTTG
Sbjct: 134 GDKEEEGDRKPIKAFLDVGITRTTTG 159
>UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_2951, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 117
Score = 100 bits (240), Expect = 2e-20
Identities = 54/101 (53%), Positives = 66/101 (65%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
+ FVK K + Y KR+QVKFK RR GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 12 LAFVKAQKTRAYSKRFQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 71
Query: 221 TCQVAYSRIXGAILCALLIHMSCHVMV*RLV*QIMLQHIQL 343
T Q+ + I G + I M+C M + V QI Q I L
Sbjct: 72 TAQIISASIAGDM---RPIPMNCLTMGLKWVLQITRQLIVL 109
>UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-green
alga; n=1; Ostreococcus tauri|Rep: T08009 probable
ribosomal protein L5-green alga - Ostreococcus tauri
Length = 331
Score = 93.5 bits (222), Expect = 3e-18
Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Frame = +2
Query: 56 VVKNKQYFKRYQVKFKXRREG--KTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 229
V K Y RYQVKF RR G KTDY AR+RL+ QDKNKYN+PKYR +VR +N+DV CQ
Sbjct: 13 VAKTTAYQSRYQVKFARRRLGACKTDYQARQRLITQDKNKYNSPKYRFVVRFTNRDVVCQ 72
Query: 230 VAYSRIXGAI-LCALLIH 280
V Y+ + G + +CA H
Sbjct: 73 VVYATLSGDVTICAAYSH 90
Score = 77.4 bits (182), Expect = 2e-13
Identities = 36/82 (43%), Positives = 45/82 (54%)
Frame = +1
Query: 262 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 441
+CAAYSHELP+YG+K GLTNYAA Y+TG +Y+VE
Sbjct: 84 ICAAYSHELPKYGMKAGLTNYAATYATGLLCARRLLTKYGLADAYEGKTEDLGEDYHVEQ 143
Query: 442 VDNGPGAFRCYLDVGLARTTTG 507
D F+C+LD GL RT+TG
Sbjct: 144 GDEEARPFKCFLDTGLVRTSTG 165
>UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas
vaginalis|Rep: Ribosomal protein L5 - Trichomonas
vaginalis
Length = 308
Score = 77.8 bits (183), Expect = 1e-13
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = +2
Query: 53 KVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
K+VKN YF R+Q KF+ RRE KTDY R +L+ QDK KY KYRL+ R++N V Q+
Sbjct: 4 KLVKNAGYFSRFQTKFRRRREAKTDYVQRTQLIQQDKTKYGAAKYRLVARITNTKVIAQI 63
Query: 233 AYSRIXG 253
+ + G
Sbjct: 64 VVAELTG 70
Score = 55.2 bits (127), Expect = 9e-07
Identities = 34/82 (41%), Positives = 42/82 (51%)
Frame = +1
Query: 262 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 441
VC A S ELP+YG+K+GL+NY AAY+TG EY +
Sbjct: 74 VCQALSTELPKYGIKLGLSNYPAAYATG---LLVARRFLTQMKLADVFKTEITEEYLNDE 130
Query: 442 VDNGPGAFRCYLDVGLARTTTG 507
+ P F+ LDVGLARTTTG
Sbjct: 131 ENRRP--FKVILDVGLARTTTG 150
>UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L18p/L5e
family protein - Tetrahymena thermophila SB210
Length = 590
Score = 72.5 bits (170), Expect = 5e-12
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 92 VKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI-XGAILCA 268
++ K +G TDYYARKRL++QDK+KYNTPKYRL+ R +N + Q+ Y+ + +LCA
Sbjct: 307 IQIKQNYQGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCA 366
Score = 56.0 bits (129), Expect = 5e-07
Identities = 30/83 (36%), Positives = 39/83 (46%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
++CAA S+EL R+GV GL +YAAAY+TG +NV+
Sbjct: 363 VLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVD 422
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
F+ LD GL RTTTG
Sbjct: 423 EDQKEKKPFKAILDAGLVRTTTG 445
Score = 43.2 bits (97), Expect = 0.004
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYY 133
+GFVKV+K K YFKR+Q K++ RR GK YY
Sbjct: 13 LGFVKVLKTKAYFKRFQTKYR-RRRGKQLYY 42
>UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus
musculus|Rep: PREDICTED: cadherin 18 - Mus musculus
Length = 339
Score = 62.1 bits (144), Expect = 8e-09
Identities = 45/131 (34%), Positives = 62/131 (47%)
Frame = +2
Query: 89 QVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIXGAILCA 268
+++F+ +EGKTDYYARKRL +QDKN+YNTP+ + + ++ C
Sbjct: 36 KLRFRRWQEGKTDYYARKRLEIQDKNEYNTPEXDDSSCNXQRYHLPDCIXKKFXSSVPC- 94
Query: 269 LLIHMSCHVMV*RLV*QIMLQHIQLVCY*HEDCFKDLDLTPYTLAQQMSQVMNTMLNLST 448
+HM MV +L IMLQ I L C L T A+ +NTM T
Sbjct: 95 --MHMKFQNMVXKLAXNIMLQPIALACCWPAGFXIGLAWTRSMKAKWRXMEVNTMWKALT 152
Query: 449 MDQEHLDVIWM 481
+ IWM
Sbjct: 153 VSLVPSLAIWM 163
>UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L5 -
Encephalitozoon cuniculi
Length = 283
Score = 60.5 bits (140), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +2
Query: 68 KQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 247
+ Y K +QVK + RREGKTDY R ++ QD N + K+RL+VR++ V CQ+ + +
Sbjct: 4 RNYHKNFQVKRRRRREGKTDYKHRTNMIRQDSNSCGSVKHRLVVRITGSRVICQIVAAYM 63
Query: 248 XG 253
G
Sbjct: 64 DG 65
Score = 45.2 bits (102), Expect = 0.001
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV- 435
++ A S EL RYG+ G TNY+AAY+TG Y+V
Sbjct: 68 VMVYADSRELERYGINFGATNYSAAYATG--FLIGRRALTAMSLDEVYRPKEIDGTYSVT 125
Query: 436 EPVDNGPGAFRCYLDVGLARTTTG 507
+ +D A R +LD+GLAR+T G
Sbjct: 126 KDIDGEKKAPRVFLDIGLARSTRG 149
>UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillardia
theta|Rep: 60S ribosomal protein L5 - Guillardia theta
(Cryptomonas phi)
Length = 232
Score = 58.8 bits (136), Expect = 7e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +2
Query: 65 NKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSR 244
N Y R+++K + RR GKTDY R +L+ QDK K+ K R+I+R S ++++ Q+ S
Sbjct: 9 NASYHSRFKLKKRRRRIGKTDYKKRMKLIRQDKKKFENKKKRIIIRFSKRNLSLQMVNSN 68
Query: 245 IXG 253
+ G
Sbjct: 69 VDG 71
>UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 55.2 bits (127), Expect = 9e-07
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTG 345
IVCAAY+HELP+ GVKVGLTNYAAAY G
Sbjct: 24 IVCAAYAHELPKSGVKVGLTNYAAAYCIG 52
>UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1;
Theileria sp. CAAS-2005|Rep: Putative uncharacterized
protein - Theileria sp. CAAS-2005
Length = 255
Score = 54.0 bits (124), Expect = 2e-06
Identities = 32/80 (40%), Positives = 37/80 (46%)
Frame = +1
Query: 268 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 447
+A S EL YGVKVGLTNYAAAY TG Y+VE +
Sbjct: 26 SADSAELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKLEVDGEVYHVEEEE 85
Query: 448 NGPGAFRCYLDVGLARTTTG 507
N F+ LDVG+ TTG
Sbjct: 86 NERRPFKALLDVGVKNVTTG 105
>UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31;
Archaea|Rep: 50S ribosomal protein L18P - Aeropyrum
pernix
Length = 214
Score = 41.9 bits (94), Expect = 0.009
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +2
Query: 83 RYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIXG 253
RY+V + RREGKT+YY R RLV + K R+ VR+SN+ + Q +RI G
Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLV-------KSGKPRMAVRISNEYLWVQFLEARIEG 55
>UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1;
Methanoculleus marisnigri JR1|Rep: Ribosomal protein
L18P/L5E - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 175
Score = 39.9 bits (89), Expect = 0.035
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 83 RYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIXG 253
RY V F+ R EGKTDYY R L+ TP R++VR +N+ + Q+ + G
Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLL-----SSGTP--RMVVRKTNRQIIVQLVVPEVEG 55
>UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L18P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 187
Score = 37.1 bits (82), Expect = 0.25
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 83 RYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
RY+V + RRE +TDY+ R RL+ + K RL+ R SNK V Q+
Sbjct: 6 RYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQL 48
>UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2;
Methanobacteriaceae|Rep: 50S ribosomal protein L18P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 193
Score = 36.7 bits (81), Expect = 0.33
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 86 YQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRL-SNKDVT 223
Y+V+FK RREGKT+Y R +LV DK R++VR+ SN +T
Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTIT 46
>UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12;
Archaea|Rep: 50S ribosomal protein L18P - Methanosarcina
mazei (Methanosarcina frisia)
Length = 174
Score = 35.5 bits (78), Expect = 0.76
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +2
Query: 83 RYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
RY+V F+ RREG+T+Y+ R +L++ ++ R++VR S ++V Q+
Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQL 48
>UniRef50_Q9K4U6 Cluster: 15,16-dihydrobiliverdin:ferredoxin
oxidoreductase; n=1; Prochlorococcus marinus|Rep:
15,16-dihydrobiliverdin:ferredoxin oxidoreductase -
Prochlorococcus marinus
Length = 241
Score = 35.5 bits (78), Expect = 0.76
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
+ F +V+ ++YF RY + + D+ ++K + + D NKY +P + L+ S D+
Sbjct: 102 LDFQPLVQEERYFCRYYKDLQILKNRFVDFNSQKTMKIYDSNKYFSP-WVLLYNGSFDDL 160
Query: 221 TCQVA 235
C +A
Sbjct: 161 QCSLA 165
>UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2;
environmental samples|Rep: Ribosomal protein L18/L5 -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 171
Score = 35.1 bits (77), Expect = 1.0
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 80 KRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
K +++FK RR G+TDY R R++ R +VR+SN TCQ+
Sbjct: 5 KNQRLRFKRRRTGETDYRRRMRML-------RGGATRAVVRVSNTQTTCQL 48
>UniRef50_Q0PH56 Cluster: TraG-like protein; n=5; Neisseria
gonorrhoeae|Rep: TraG-like protein - Neisseria
gonorrhoeae
Length = 1138
Score = 34.3 bits (75), Expect = 1.8
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = -3
Query: 376 VFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVGETH 197
+F V + + + NMLQ+N + N A K RT++ + N G++A +F G
Sbjct: 204 LFTNVSQIASRRGNMLQYNGKSKTMTCNEAAKELKDRTRFYSKNYLPGYIADRVFAGLGT 263
Query: 196 NQTIFRCVIFVLVLNNEAFTSIIISFPFTT 107
N V ++ L N +F ++ + F T
Sbjct: 264 NSAGINRVNALVTLGNSSFQYLLDNARFDT 293
>UniRef50_Q4P153 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 534
Score = 32.3 bits (70), Expect = 7.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 376 VFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRT----QYGTXNPRVGHLA 224
+F A+ DQ +L H++++ H+ A+H ++ Q+ NP +GH A
Sbjct: 120 IFSAMNAAQFDQYGLLSHSVANASHQHHAASHQHQHHQQPHHQHAAFNPALGHAA 174
>UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella
natans|Rep: Ribosomal protein L5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 252
Score = 31.9 bits (69), Expect = 9.4
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 41 MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYAR--KRLVVQDKNKYNTPKYRLIVRLSNK 214
M + K++KN YF ++ VK + R+ T Y R + NK + K+R +N
Sbjct: 1 MIYQKIIKNASYFSKFVVKHRRNRKFLTKYGKSYDSRFLKSYTNK--SKKFRSYFTTTNT 58
Query: 215 DVTCQVAYSRIXGAILCA 268
+++ + +S + G + A
Sbjct: 59 NLSGVITFSSLSGDTIVA 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,294,267
Number of Sequences: 1657284
Number of extensions: 9229997
Number of successful extensions: 20246
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 19746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20231
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -